Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002942 and ABIE53_002943 overlap by 4 nucleotidesABIE53_002943 and ABIE53_002944 overlap by 8 nucleotidesABIE53_002944 and ABIE53_002945 are separated by 242 nucleotidesABIE53_002945 and ABIE53_002946 are separated by 140 nucleotides ABIE53_002942: ABIE53_002942 - myo-inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase, at 3,328,176 to 3,329,225 _002942 ABIE53_002943: ABIE53_002943 - myo-inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase, at 3,329,222 to 3,330,241 _002943 ABIE53_002944: ABIE53_002944 - DNA-binding MurR/RpiR family transcriptional regulator, at 3,330,234 to 3,331,115 _002944 ABIE53_002945: ABIE53_002945 - simple sugar transport system substrate-binding protein, at 3,331,358 to 3,332,404 _002945 ABIE53_002946: ABIE53_002946 - simple sugar transport system permease protein, at 3,332,545 to 3,333,726 _002946
Group Condition ABIE53_002942 ABIE53_002943 ABIE53_002944 ABIE53_002945 ABIE53_002946
carbon source m-Inositol (C) -0.2 -2.8 -0.9 -3.0 -3.9
carbon source m-Inositol (C) -0.0 -2.9 -0.9 -2.3 -2.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.2 -4.3 -0.0 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.1 -4.2 +0.1 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 -3.2 +0.0 +0.4
stress RCH2_defined_glucose_5mM with Salicylic 5 mM +0.2 -0.8 -2.3 +0.2 -0.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM +0.2 -1.1 -1.1 +0.1 -1.0
carbon source Inosine (C) +0.1 -0.8 -0.8 +0.1 -1.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 -2.9 +0.1 +0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -1.5 +1.3 +0.2 -1.1
soil extract Indole-3-pyruvic 5 mM in soil extract +0.7 -1.6 -1.5 +0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -1.2 +0.9 -0.2 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 -2.8 +0.1 +1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.3 -1.7 -0.2 +1.0
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.2 +0.9 -1.5 +0.2 +0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -0.3 +1.9 +0.5 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -1.5 +1.6 +0.2 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -1.6 +2.3 +0.6 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.3 +2.1 +0.1 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.2 +1.7 -0.0 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.3 +1.8 +0.7 -0.4
plant outgrowth control Plant outgrowth control -0.5 +0.2 +1.4 +0.2 +1.1
carbon source Uridine (C) -0.2 -1.0 +3.4 -0.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 +2.8 -0.3 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.2 +2.2 +0.8 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.2 -0.9 +1.9 +0.5 +0.1
carbon source D-Arabinose (C) -0.2 -0.1 +3.9 -0.1 -0.5
carbon source Uridine (C) -0.4 -0.5 +3.6 +0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.0 -0.2 +3.2 +0.6 +0.5
carbon source D-Arabinose (C) +0.1 +0.3 +4.0 -0.0 +0.3
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