Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002939 and ABIE53_002940 are separated by 69 nucleotidesABIE53_002940 and ABIE53_002941 are separated by 129 nucleotidesABIE53_002941 and ABIE53_002942 are separated by 121 nucleotidesABIE53_002942 and ABIE53_002943 overlap by 4 nucleotides ABIE53_002939: ABIE53_002939 - valyl-tRNA synthetase, at 3,323,861 to 3,326,740 _002939 ABIE53_002940: ABIE53_002940 - UTP--glucose-1-phosphate uridylyltransferase, at 3,326,810 to 3,327,691 _002940 ABIE53_002941: ABIE53_002941 - tRNA 2-thiouridine synthesizing protein A, at 3,327,821 to 3,328,054 _002941 ABIE53_002942: ABIE53_002942 - myo-inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase, at 3,328,176 to 3,329,225 _002942 ABIE53_002943: ABIE53_002943 - myo-inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase, at 3,329,222 to 3,330,241 _002943
Group Condition ABIE53_002939 ABIE53_002940 ABIE53_002941 ABIE53_002942 ABIE53_002943
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -4.4 N.D. +0.0 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -4.1 N.D. -0.5 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -3.3 N.D. +0.1 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -3.7 N.D. -0.0 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.8 N.D. -0.1 -2.2
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. -3.4 N.D. +0.0 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.5 N.D. +0.1 -0.5
stress RCH2_defined_glucose_5mM with Salicylic 5 mM N.D. -3.3 N.D. +0.2 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.6 N.D. -0.3 -1.6
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM N.D. -4.1 N.D. -0.2 +0.9
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM N.D. -3.1 N.D. +0.3 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -3.1 N.D. +0.1 -0.3
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -2.4 N.D. +0.1 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.4 N.D. -0.0 +0.3
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. -2.1 N.D. +0.7 -1.6
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM N.D. -2.1 N.D. +0.2 -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -3.4 N.D. +0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -2.9 N.D. +0.2 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -2.1 N.D. +1.2 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -2.7 N.D. +0.2 +0.8
carbon source m-Inositol (C) N.D. +1.8 N.D. -0.2 -2.8
carbon source m-Inositol (C) N.D. +1.7 N.D. -0.0 -2.9
carbon source D-Glucosamine Hydrochloride (C) N.D. +1.5 N.D. -0.2 -1.9
carbon source L-Glutamine (C) N.D. +2.6 N.D. -0.3 -0.7
carbon source 4-Hydroxybenzoic Acid (C) N.D. +3.0 N.D. -0.0 -0.9
carbon source Glucuronamide (C) N.D. +3.1 N.D. -0.3 -0.2
carbon source Tween 20 (C) N.D. +4.3 N.D. -0.7 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +3.7 N.D. +0.1 -0.9
carbon source Tween 20 (C) N.D. +4.1 N.D. -0.5 -0.2
carbon source Glucuronamide (C) N.D. +3.5 N.D. +0.1 -0.0
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