Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_002887	ABIE53_002888	ABIE53_002889	ABIE53_002890	ABIE53_002891
carbon source	Azelaic 20 mM (C)	+0.1	N.D.	-1.0	-0.8	-3.3
carbon source	L-Phenylalanine (C)	-0.1	N.D.	-1.4	-3.1	-0.2
carbon source	Azelaic 20 mM (C)	-0.5	N.D.	-0.7	-0.6	-2.5
carbon source	L-Phenylalanine (C)	+0.1	N.D.	-1.4	-2.6	-0.3
stress	R2A with Abscisic 10 uM	-1.5	N.D.	+0.0	-0.0	-0.5
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.3	N.D.	-0.1	-0.5	-0.1
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-1.6	N.D.	+0.4	+0.1	-0.6
carbon source	D-Glucose-6-Phosphate (C)	-0.9	N.D.	-0.1	-0.0	-0.8
carbon source	D-Fructose (C)	-0.9	N.D.	-0.4	+0.0	-0.3
r2a shaking control	R2A shaking control	-1.1	N.D.	+0.2	-0.2	-0.3
r2a outgrowth control	R2A outgrowth control	-1.2	N.D.	-0.2	+0.3	-0.0
stress	R2A with N-decanoyl-DL-Homoserine lactone 10 uM	-0.7	N.D.	+0.1	+0.2	-0.6
m9 no stress control	M9 no stress control	-1.2	N.D.	+0.1	-0.0	+0.2
carbon source	D-Lactate (C)	-1.2	N.D.	+0.2	-0.1	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	N.D.	-0.4	-0.1	+0.6
plant outgrowth control	Plant outgrowth control	-0.9	N.D.	+0.2	+0.3	-0.3
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.9	N.D.	+0.0	+0.5	-0.2
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.0	N.D.	+0.4	+0.5	-0.1
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	-0.9	N.D.	+0.7	+0.4	-0.0
carbon source	Laminarin 10 g/L (C)	+0.9	N.D.	-0.3	-0.2	-0.3
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.6	N.D.	+0.0	-0.3	-0.5
soil extract	Lumichrome 5 mM in soil extract	+1.0	N.D.	-0.2	-0.2	+0.2
carbon source	Acetylated xylan 10 g/L (C)	+0.9	N.D.	+0.5	+0.5	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.7	N.D.	+0.0	+0.8	-0.3
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.5	N.D.	+0.4	+0.5	-0.2
carbon source	D-Lactate (C)	+1.2	N.D.	+0.3	-0.1	-0.1
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	+0.2	N.D.	+0.9	+0.3	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.5	N.D.	+0.2	+0.4	+1.3
carbon source	Acetylated xylan 10 g/L (C)	+1.0	N.D.	+1.2	+0.5	+0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	N.D.	+1.4	+0.3	+0.5