Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002827 and ABIE53_002828 are separated by 36 nucleotidesABIE53_002828 and ABIE53_002829 are separated by 93 nucleotidesABIE53_002829 and ABIE53_002830 are separated by 16 nucleotidesABIE53_002830 and ABIE53_002831 are separated by 503 nucleotides ABIE53_002827: ABIE53_002827 - L-fuconate dehydratase, at 3,195,695 to 3,197,011 _002827 ABIE53_002828: ABIE53_002828 - ribose transport system substrate-binding protein, at 3,197,048 to 3,197,989 _002828 ABIE53_002829: ABIE53_002829 - ribose transport system permease protein, at 3,198,083 to 3,199,108 _002829 ABIE53_002830: ABIE53_002830 - ribose transport system ATP-binding protein, at 3,199,125 to 3,200,636 _002830 ABIE53_002831: ABIE53_002831 - uncharacterized protein YbjT (DUF2867 family), at 3,201,140 to 3,201,895 _002831
Group Condition ABIE53_002827 ABIE53_002828 ABIE53_002829 ABIE53_002830 ABIE53_002831
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.8 -0.1 -0.4 -3.3
stress M9 with Chloride 200 mM +0.3 -1.1 -0.4 -0.6 -2.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.5 -0.0 +0.4 -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 +0.1 -0.5 -0.3 -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -1.1 -0.8 +0.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.5 +0.4 -0.0 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.1 +0.3 -0.3 -1.0
nitrogen source histamine 2mM N source -0.2 -1.8 +0.3 -0.2 +0.1
stress R2A with Chloride 200 mM +0.4 -0.4 -0.4 -0.1 -1.1
r2a no shaking R2A no shaking -0.1 -0.9 +0.3 +0.0 -1.0
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.0 -0.6 +0.4 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -1.8 +0.1 +0.2 +0.6
stress RCH2_defined_glucose_5mM with L-Proline 5 mM +0.2 +0.4 -0.1 -0.4 -1.4
carbon source D,L-Malic Acid (C) -0.1 -0.4 +0.4 +0.3 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 -1.6 -0.3 +0.8 -0.2
carbon source Acetylated xylan 10 g/L (C) -0.7 -1.2 +0.3 -0.6 +1.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +1.2 +0.0 -0.4 -1.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.9 -0.3 -0.4 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.7 +0.1 +0.5 -0.8
carbon source D-Lactate (C) -0.2 -0.8 +0.7 +0.7 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.3 -0.2 +0.5 -0.0
carbon source Laminarin 10 g/L (C) -0.2 -0.8 -0.3 +0.2 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.4 +0.5 +0.7 -0.7
carbon source Acetylated xylan 10 g/L (C) -0.2 -1.1 -0.1 +0.4 +0.8
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.9 -0.6 -0.4 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.5 -0.7 +0.6 +1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.6 +0.3 +0.9 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -0.4 -0.5 +0.6 +1.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 -0.7 +0.3 -0.3 +2.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.1 +1.5 +0.3 -0.2 +0.5
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ABIE53_002827
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ABIE53_002828
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ABIE53_002830
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ABIE53_002831
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