Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_002781	ABIE53_002782	ABIE53_002783	ABIE53_002784	ABIE53_002785
carbon source	D-Galactose (C)	N.D.	-1.5	-1.7	-1.3	-0.7
carbon source	D,L-Malic Acid (C)	N.D.	-1.5	-1.2	-1.5	-0.8
carbon source	L-Serine (C)	N.D.	-2.5	-0.8	-0.9	-0.8
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-4.1	-0.2	+0.2	-0.4
carbon source	L-Lactate (C)	N.D.	-2.2	-1.0	-0.9	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-4.4	+0.2	+0.1	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-2.9	-1.2	-0.0	-0.2
carbon source	4-Hydroxybenzoic Acid (C)	N.D.	-1.7	-1.2	-0.6	-0.7
carbon source	D-Arabinose (C)	N.D.	-0.9	-1.1	-1.4	-0.7
carbon source	D-Galacturonic Acid (C)	N.D.	-1.6	-0.8	-1.1	-0.4
carbon source	4-Hydroxybenzoic Acid (C)	N.D.	-1.6	-1.0	-0.4	-0.9
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-3.3	-0.6	+0.4	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-3.2	-0.3	-0.2	-0.0
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	N.D.	-3.2	-0.4	-0.0	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-2.9	-0.1	-0.4	-0.2
carbon source	D-Lactate (C)	N.D.	-1.5	-0.7	-0.8	-0.4
carbon source	D-Xylose (C)	N.D.	-1.3	-1.0	-0.6	-0.5
carbon source	Glycerol (C)	N.D.	-1.2	-1.4	-0.3	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-2.2	-1.1	+0.0	+0.1
carbon source	Acetylated xylan 10 g/L (C)	N.D.	-3.9	-0.0	+0.6	+0.1
carbon source	Tween 20 (C)	N.D.	-2.2	-1.1	+0.1	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-2.8	-0.3	+0.2	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-2.1	-1.1	+0.3	+0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-2.9	-0.2	+0.4	-0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-3.4	+0.1	+0.8	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-2.6	-0.5	+0.4	+0.1
carbon source	Acetylated xylan 10 g/L (C)	N.D.	-2.9	-0.1	+0.6	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-2.2	-0.5	+0.9	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-1.5	-1.0	+1.0	+0.2
plant outgrowth control	Plant outgrowth control	N.D.	+2.5	+0.6	+0.4	-0.0