Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_002669	ABIE53_002670	ABIE53_002671	ABIE53_002672	ABIE53_002673
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.2	-0.9	-0.6	-0.3
carbon source	D-Glucose-6-Phosphate (C)	-1.5	-0.6	-0.2	-0.3	+0.4
carbon source	Acetylated xylan 10 g/L (C)	-0.3	-0.1	-1.5	+0.1	-0.5
carbon source	D-Galacturonic Acid (C)	-0.2	-0.5	-1.4	-0.3	+0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.0	-0.1	-1.7	-0.1	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.3	+0.3	-1.6	-0.2	-0.1
carbon source	D-Lactate (C)	-0.4	-0.7	-0.9	-0.1	+0.1
carbon source	D,L-Malic Acid (C)	-0.6	-0.9	-0.3	-0.2	+0.1
carbon source	Acetylated xylan 10 g/L (C)	-0.3	+0.2	-1.3	-0.1	-0.3
soil extract	caffeic 5 mM in soil extract	-1.3	+0.0	-0.7	+0.0	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.4	-1.2	-0.4	-0.5	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.9	-0.4	-0.7	+0.2	+0.2
carbon source	Shikimic Acid 5 mM (C)	-0.7	-0.1	-0.7	+0.2	-0.3
carbon source	L-Alanine (C)	-1.2	-0.6	+0.3	-0.0	+0.0
carbon source	Laminarin 10 g/L (C)	-1.2	+0.1	-0.3	+0.2	-0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-1.2	-0.4	-0.1	+0.0
carbon source	D-Fructose (C)	-0.2	-0.1	-1.1	-0.3	+0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.2	-0.8	-0.2	+0.4
carbon source	L-Fucose (C)	-0.2	+0.3	-1.2	-0.2	+0.2
pH	R2A pH 8.3	-0.6	-0.7	+0.5	-0.2	+0.0
nitrogen source	histamine 2mM N source	-0.7	-0.7	+0.5	-0.1	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	+0.4	-1.1	-0.2	-0.0
carbon source	L-Arginine (C)	+0.7	-0.3	-0.9	-0.1	+0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.4	+0.7	+0.1	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.8	-0.3	+0.6	+0.2	+0.4
stress	R2A with Chloride 200 mM	+0.1	+0.3	-0.9	+0.4	+0.2
biofilm	biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound	-0.1	-0.6	+1.2	-0.1	+0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.5	+0.9	+0.3	+0.1
stress	R2A with N-decanoyl-DL-Homoserine lactone 10 uM	-0.3	+0.3	+1.1	-0.2	+0.1
carbon source	Azelaic 20 mM (C)	-0.3	+0.6	+1.0	-0.2	+0.1