Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002658 and ABIE53_002659 are separated by 256 nucleotidesABIE53_002659 and ABIE53_002660 are separated by 805 nucleotidesABIE53_002660 and ABIE53_002661 overlap by 4 nucleotidesABIE53_002661 and ABIE53_002662 overlap by 4 nucleotides ABIE53_002658: ABIE53_002658 - membrane-associated phospholipid phosphatase, at 2,996,468 to 2,997,235 _002658 ABIE53_002659: ABIE53_002659 - hypothetical protein, at 2,997,492 to 2,997,797 _002659 ABIE53_002660: ABIE53_002660 - NitT/TauT family transport system permease protein, at 2,998,603 to 2,999,409 _002660 ABIE53_002661: ABIE53_002661 - NitT/TauT family transport system ATP-binding protein, at 2,999,406 to 3,000,164 _002661 ABIE53_002662: ABIE53_002662 - dienelactone hydrolase, at 3,000,161 to 3,001,477 _002662
Group Condition ABIE53_002658 ABIE53_002659 ABIE53_002660 ABIE53_002661 ABIE53_002662
carbon source Acetylated xylan 10 g/L (C) -0.4 -1.2 -1.1 N.D. -0.0
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +0.1 -0.8 -1.6 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.7 -0.7 N.D. -1.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.4 -0.1 N.D. -1.1
stress R2A with Tricalcium phosphate 0.5 g/L -0.6 -1.5 +0.2 N.D. -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.3 -1.5 N.D. -0.6
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut +0.1 -1.6 -0.2 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -1.0 -0.9 N.D. +0.1
plant outgrowth control Plant outgrowth control -0.1 -1.7 +0.1 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -1.0 +0.3 N.D. -0.0
stress R2A with Tricalcium phosphate 0.5 g/L -0.6 -1.0 -0.5 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.4 -2.0 N.D. +0.6
carbon source L-Proline (C) +0.4 +0.1 -2.0 N.D. -0.1
stress R2A with Chloride 200 mM +0.5 -1.0 +0.0 N.D. -0.9
carbon source L-Histidine (C) +1.0 -0.2 -1.3 N.D. -0.4
carbon source Tween 20 (C) +0.7 +0.2 -0.6 N.D. -0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.0 +0.9 -0.6 N.D. +0.3
carbon source D-Sorbitol (C) +1.2 -0.3 -0.2 N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.5 +0.9 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.6 +0.9 N.D. -0.6
carbon source D-Fructose (C) +1.1 -1.1 +0.1 N.D. +0.1
carbon source D-Mannose (C) +1.2 -0.7 -0.6 N.D. +0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.4 -1.2 N.D. +0.8
carbon source D-Glucose-6-Phosphate (C) +0.8 +0.6 -0.8 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 +0.5 +1.5 N.D. -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 +1.6 +0.3 N.D. +0.1
nitrogen source histamine 2mM N source +0.6 -0.4 +0.6 N.D. +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.8 +2.1 N.D. -1.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 +0.5 +1.6 N.D. +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +1.5 -0.2 N.D. +0.2
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