Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002637 and ABIE53_002638 are separated by 58 nucleotidesABIE53_002638 and ABIE53_002639 are separated by 198 nucleotidesABIE53_002639 and ABIE53_002640 are separated by 11 nucleotidesABIE53_002640 and ABIE53_002641 overlap by 4 nucleotides ABIE53_002637: ABIE53_002637 - methylisocitrate lyase, at 2,969,777 to 2,970,637 _002637 ABIE53_002638: ABIE53_002638 - DNA-binding GntR family transcriptional regulator, at 2,970,696 to 2,971,382 _002638 ABIE53_002639: ABIE53_002639 - hypothetical protein, at 2,971,581 to 2,972,918 _002639 ABIE53_002640: ABIE53_002640 - enoyl-CoA hydratase/carnithine racemase, at 2,972,930 to 2,973,670 _002640 ABIE53_002641: ABIE53_002641 - propionate CoA-transferase, at 2,973,667 to 2,975,295 _002641
Group Condition ABIE53_002637 ABIE53_002638 ABIE53_002639 ABIE53_002640 ABIE53_002641
r2a outgrowth control R2A outgrowth control +0.3 N.D. -1.6 -3.6 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. -0.1 -2.6 -1.1
soil extract caffeic 5 mM in soil extract +0.2 N.D. -0.8 -2.4 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -1.0 -2.6 -0.1
r2a outgrowth control R2A outgrowth control +0.0 N.D. -0.8 -2.7 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.0 -3.5 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 N.D. +0.1 -2.9 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 N.D. -0.4 -2.3 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 N.D. -0.4 -2.5 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.4 -2.7 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 N.D. -0.2 -2.9 -0.1
stress RCH2_defined_glucose_5mM with Chlorogenic 1 mM -0.1 N.D. -0.6 -2.1 -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 N.D. +0.2 -2.9 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 N.D. -0.9 -1.8 -0.0
stress RCH2_defined_glucose_5mM with Shikimic Acid 5 mM +0.5 N.D. -0.5 -2.5 -0.1
r2a outgrowth control R2A outgrowth control -0.0 N.D. +0.1 -2.6 -0.0
carbon source D-Arabinose (C) +0.1 N.D. +0.2 -2.9 -0.1
carbon source D-Sorbitol (C) +0.3 N.D. -0.5 -2.3 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 N.D. -1.1 -1.4 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 N.D. +0.2 -2.3 -0.3
stress control RCH2_defined_glucose_5mM with no stress +0.1 N.D. -0.6 -1.8 -0.1
carbon source Laminarin 10 g/L (C) -0.6 N.D. +0.2 -1.9 -0.0
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM +0.3 N.D. -0.0 -2.5 -0.1
carbon source Shikimic Acid (C) -0.2 N.D. +0.3 -2.3 +0.2
stress RCH2_defined_glucose_5mM with Adenine 4 mM +0.4 N.D. -0.7 -1.5 -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 N.D. +0.5 -1.5 -0.5
stress M9 with Chloride 200 mM +0.3 N.D. +0.9 -1.5 +0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.7 N.D. -1.2 +2.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 N.D. -0.5 +1.6 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 N.D. -0.3 +2.1 -0.5
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