Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_002631	ABIE53_002632	ABIE53_002633	ABIE53_002634	ABIE53_002635
r2a outgrowth control	R2A outgrowth control	+0.4	-0.3	-3.0	-0.6	-0.4
stress	RCH2_defined_glucose_5mM with homovanillyl alcohol 5 mM	+0.0	+0.2	-2.6	-0.1	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	-0.0	-2.0	-1.1	+0.7
carbon source	L-Glutamic (C)	-0.3	+0.2	-1.7	+0.2	-0.6
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	+0.2	+0.2	-2.3	-0.2	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.7	-1.5	-0.5	-1.4
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	+0.3	+0.2	-1.1	-1.2	-0.2
carbon source	D-Glucosamine Hydrochloride (C)	+0.3	-0.0	-2.2	-0.1	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	+0.8	-1.0	-0.4	-0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.3	-1.0	-1.0	+1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.2	-1.9	+0.4	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.8	+0.2	-1.3	-0.4	+0.5
soil extract	D,L-Malic Acid 5 mM in soil extract	+0.4	+0.3	-1.7	+0.4	+0.7
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.8	+0.0	-1.5	+0.7	+0.7
soil extract	Lumichrome 5 mM in soil extract	-0.3	-0.3	+1.2	-0.5	+0.6
stress	R2A with Salicylic 10 uM	+0.5	+0.5	-1.1	+1.0	-0.1
plant outgrowth control	Plant outgrowth control	+0.2	+0.0	+0.7	+1.3	-1.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	+0.3	+0.1	-1.6	+1.9
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.2	+0.9	-0.8	+1.3
carbon source	L-Histidine (C)	+0.5	+0.5	+0.4	+1.0	-0.9
carbon source	D-Sorbitol (C)	+0.1	+0.3	+0.9	+1.0	-0.6
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.1	-0.6	+2.4	-0.3
carbon source	D-Fructose (C)	+0.4	+0.6	+0.9	+0.7	-0.8
carbon source	D-Mannose (C)	+0.2	+0.5	+1.1	+1.1	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.3	+0.7	-0.8	+3.1
carbon source	D-Galacturonic Acid (C)	+0.4	+0.3	+1.0	+1.0	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.2	-0.2	+1.6	+0.4	+0.6
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.2	+1.6	+1.1	-0.2	+0.4
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.4	+1.1	+1.5	+0.3	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.7	+0.4	+0.3	+0.3	+1.5