Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_002621 and ABIE53_002622 are separated by 39 nucleotidesABIE53_002622 and ABIE53_002623 are separated by 16 nucleotidesABIE53_002623 and ABIE53_002624 are separated by 15 nucleotidesABIE53_002624 and ABIE53_002625 are separated by 31 nucleotides ABIE53_002621: ABIE53_002621 - ribose transport system substrate-binding protein, at 2,953,843 to 2,954,982 _002621 ABIE53_002622: ABIE53_002622 - N-acyl homoserine lactone hydrolase, at 2,955,022 to 2,955,801 _002622 ABIE53_002623: ABIE53_002623 - uncharacterized protein (DUF849 family), at 2,955,818 to 2,956,750 _002623 ABIE53_002624: ABIE53_002624 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 2,956,766 to 2,957,572 _002624 ABIE53_002625: ABIE53_002625 - DNA-binding GntR family transcriptional regulator, at 2,957,604 to 2,958,329 _002625
Group Condition ABIE53_002621 ABIE53_002622 ABIE53_002623 ABIE53_002624 ABIE53_002625
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.3 -0.1 -0.3 -1.6 -0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 -0.3 -0.4 -1.0 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.3 -0.0 +0.8 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.1 +0.4 -0.7 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.5 +0.6 -0.7 -0.0
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.5 +0.1 +0.7 -0.8
carbon source Tween 20 (C) -0.1 +0.3 -0.4 +0.7 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.1 +0.3 +0.9 -0.9
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.4 +0.3 -0.4 +0.4 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 +0.5 -0.7 -0.3 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.7 +0.5 +0.5 +0.2
stress Growth in presence of limonene +0.5 +0.0 +0.2 -1.0 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -0.2 +0.1 +1.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.4 -0.3 +0.9 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.4 -0.3 +0.1 +1.2
carbon source Shikimic Acid 5 mM (C) +0.1 -0.7 -0.5 +1.0 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.3 -0.1 +0.9 -0.5
plant outgrowth control Plant outgrowth control +0.0 -0.5 +0.1 +1.1 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.1 -0.6 +0.6 +0.7
stress R2A with Tricalcium phosphate 0.5 g/L +0.2 -0.3 -0.4 +0.5 +0.9
carbon source Laminarin 10 g/L (C) +0.1 -0.3 -0.3 +0.9 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.3 -0.3 +0.8 +0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.3 -0.2 +0.6 +0.8
carbon source Acetylated xylan 10 g/L (C) -0.1 +0.2 -0.8 +1.0 +0.9
carbon source Shikimic Acid 5 mM (C) +0.0 -0.3 +0.2 +0.9 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.1 +0.7 +0.9 +0.3
carbon source Acetylated xylan 10 g/L (C) +0.4 -0.2 -0.5 +1.3 +1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.1 +0.3 +1.1 +0.5
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.3 +8.5 +0.5 -1.0
carbon source 2-Deoxy-D-Ribose (C) -0.3 -0.3 +9.2 +1.1 -1.2
remove
ABIE53_002621
plot		 remove
ABIE53_002622
plot		 remove
ABIE53_002623		 remove
ABIE53_002624
plot		 remove
ABIE53_002625
plot