Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002525 and ABIE53_002526 are separated by 155 nucleotidesABIE53_002526 and ABIE53_002527 are separated by 62 nucleotidesABIE53_002527 and ABIE53_002528 are separated by 218 nucleotidesABIE53_002528 and ABIE53_002529 overlap by 4 nucleotides ABIE53_002525: ABIE53_002525 - hypothetical protein, at 2,847,852 to 2,848,130 _002525 ABIE53_002526: ABIE53_002526 - DNA repair protein RadA/Sms, at 2,848,286 to 2,849,662 _002526 ABIE53_002527: ABIE53_002527 - alanine racemase, at 2,849,725 to 2,850,795 _002527 ABIE53_002528: ABIE53_002528 - LPLT family lysophospholipid transporter-like MFS transporter, at 2,851,014 to 2,852,408 _002528 ABIE53_002529: ABIE53_002529 - hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 2,852,405 to 2,853,214 _002529
Group Condition ABIE53_002525 ABIE53_002526 ABIE53_002527 ABIE53_002528 ABIE53_002529
stress M9 with 3-methyl-3-butenol 4.5 g/L -1.8 -0.2 N.D. -3.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.6 N.D. -3.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -1.1 N.D. -2.6 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -1.0 N.D. -3.1 N.D.
stress Growth in presence of pinene -0.4 -0.1 N.D. -3.7 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.0 N.D. -2.7 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.2 N.D. -3.0 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 -0.0 N.D. -2.5 N.D.
stress RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM -1.0 -0.0 N.D. -3.0 N.D.
plant outgrowth control Plant outgrowth control -0.9 -0.3 N.D. -2.8 N.D.
stress control RCH2_defined_glucose_5mM with hydroxide 1 mM -0.9 -0.3 N.D. -2.7 N.D.
stress RCH2_defined_glucose_5mM with 2,3-dihydroxybenzoic 5 mM -0.5 -0.4 N.D. -3.0 N.D.
carbon source Citric Acid 20 mM (C) -0.6 +0.0 N.D. -3.3 N.D.
carbon source Shikimic Acid 5 mM (C) -0.5 +0.2 N.D. -3.6 N.D.
stress R2A with Propan-1-ol 13 g/L -0.9 +0.3 N.D. -3.2 N.D.
carbon source Pectin 10 g/L (C) -0.7 +0.2 N.D. -3.3 N.D.
stress R2A with Ethanol 2.5 vol% -0.7 +0.2 N.D. -3.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.1 N.D. -3.3 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract -0.5 +0.4 N.D. -3.6 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 +0.7 N.D. -2.1 N.D.
nitrogen source Xanthine 5 mM (N) -1.0 +0.3 N.D. -2.8 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract +0.4 +0.1 N.D. -3.8 N.D.
r2a outgrowth control R2A outgrowth control +0.3 +0.1 N.D. -3.6 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.3 N.D. -3.4 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 -1.0 N.D. -2.4 N.D.
stress R2A with Propan-1-ol 13 g/L +0.6 +0.1 N.D. -3.1 N.D.
stress M9 with 3-methyl-3-butenol 4.5 g/L +0.9 +0.2 N.D. -2.9 N.D.
carbon source L-Phenylalanine (C) +1.2 +0.1 N.D. -3.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.5 N.D. -2.6 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.7 -0.4 N.D. -2.0 N.D.
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