Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002415 and ABIE53_002416 are separated by 130 nucleotidesABIE53_002416 and ABIE53_002417 are separated by 87 nucleotidesABIE53_002417 and ABIE53_002418 are separated by 2 nucleotidesABIE53_002418 and ABIE53_002419 are separated by 103 nucleotides ABIE53_002415: ABIE53_002415 - AcrR family transcriptional regulator, at 2,710,258 to 2,711,244 _002415 ABIE53_002416: ABIE53_002416 - acyl-CoA dehydrogenase, at 2,711,375 to 2,713,903 _002416 ABIE53_002417: ABIE53_002417 - 3-oxoacyl-[acyl-carrier protein] reductase, at 2,713,991 to 2,715,433 _002417 ABIE53_002418: ABIE53_002418 - acyl dehydratase, at 2,715,436 to 2,716,371 _002418 ABIE53_002419: ABIE53_002419 - acetyl-CoA C-acetyltransferase, at 2,716,475 to 2,717,776 _002419
Group Condition ABIE53_002415 ABIE53_002416 ABIE53_002417 ABIE53_002418 ABIE53_002419
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 +0.1 -0.7 -0.7 -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 +0.1 -0.5 -0.7 -0.1
r2a no shaking R2A no shaking +0.2 -0.4 -0.2 -0.3 -0.6
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 +0.1 -0.3 -0.5 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.2 -0.2 -0.4 -0.8
carbon source D-Cellobiose (C) -0.4 -0.2 -0.6 +0.3 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.0 -0.8 +0.3 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.2 -0.7 -0.5 +0.4
carbon source D-Xylose (C) -0.2 -0.2 -0.4 +0.5 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.1 +0.1 -1.1 +0.1
carbon source Azelaic 20 mM (C) +0.2 -0.4 -0.4 +0.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.1 -0.3 -0.6 +1.0 -0.3
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.5 -0.2 -0.2 +0.2 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.1 -0.6 -0.2 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.2 +0.4 -0.8 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.1 -0.3 +0.7 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.1 -0.8 +0.2 +0.4
carbon source L-Histidine (C) +0.0 -0.1 -0.5 +0.7 +0.4
carbon source Acetylated xylan 10 g/L (C) -0.5 +0.0 +0.3 +0.4 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.3 -0.1 +0.6 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.2 +0.2 -0.7 +0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.4 -0.0 +0.5 +0.3
plant outgrowth control Plant outgrowth control -0.2 +0.3 +0.8 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.1 +0.8 -0.3 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.1 +0.5 +0.2 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.2 +0.4 +0.2 +0.5
carbon source D-Glucosamine Hydrochloride (C) +0.3 +0.1 +0.1 +0.5 +0.5
r2a outgrowth control R2A outgrowth control +0.4 +0.3 +0.4 +0.2 +0.4
plant outgrowth control Plant outgrowth control -0.2 +0.2 +0.9 +0.5 +0.3
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.3 +0.7 +0.4 +1.2
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ABIE53_002415
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ABIE53_002416
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ABIE53_002418
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ABIE53_002419
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