Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_002382	ABIE53_002383	ABIE53_002384	ABIE53_002385	ABIE53_002386
carbon source	Inosine (C)	-1.0	-0.6	-1.0	-3.4	-0.3
carbon source	Inosine (C)	-0.8	-0.8	+0.0	-4.2	-0.3
carbon source	Adenosine (C)	-0.7	-1.2	-0.6	-2.4	-0.4
carbon source	Adenosine (C)	-0.1	-0.9	-0.8	-2.7	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.6	-1.4	-0.4	-0.0	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.2	-0.3	-0.3	-1.3	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.0	-0.6	+0.7	+0.1	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.3	+0.4	-0.5	-0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.4	+0.0	+0.4	-0.7	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.7	-0.4	+0.7	-0.2	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	-0.6	-0.0	+0.2	+0.3
carbon source	D-Mannose (C)	-0.5	-0.7	+0.6	+0.5	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.8	+0.8	+0.0	+0.2	-0.3
carbon source	D,L-Malic Acid (C)	+0.2	-0.3	+0.6	-0.5	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	+0.3	-0.3	+0.1	+0.5
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.6	-0.4	+0.4	-0.6	+0.2
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	-0.0	+0.4	-0.5	+1.4	-0.9
stress	R2A with Tricalcium phosphate 0.5 g/L	+0.4	+0.5	+0.2	-0.6	-0.1
carbon source	Tween 20 (C)	-0.2	-0.1	+0.8	+0.4	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	+1.0	-0.1	+0.3	-0.2
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	-0.6	-0.5	-0.5	+2.7	-0.5
soil extract	Lumazine 5 mM in soil extract	-0.1	-0.2	+0.2	+1.0	-0.2
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	+0.6	+0.3	-0.5	+1.5	-1.0
carbon source	Shikimic Acid 5 mM (C)	+0.5	+0.6	+0.4	-0.2	+0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.6	+0.3	+0.5	+0.1
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	+0.1	-0.1	+0.0	+2.3	-0.5
carbon source	D-Fructose (C)	+0.2	+0.2	+1.2	+0.6	-0.2
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	-0.3	-0.4	-0.4	+3.4	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.8	+1.0	+0.4	+0.1
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	-0.0	-0.5	-0.1	+3.5	-0.2