Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002370 and ABIE53_002371 overlap by 59 nucleotidesABIE53_002371 and ABIE53_002372 are separated by 427 nucleotidesABIE53_002372 and ABIE53_002373 are separated by 294 nucleotidesABIE53_002373 and ABIE53_002374 are separated by 120 nucleotides ABIE53_002370: ABIE53_002370 - spermidine/putrescine-binding protein, at 2,660,106 to 2,660,309 _002370 ABIE53_002371: ABIE53_002371 - spermidine/putrescine-binding protein, at 2,660,251 to 2,661,207 _002371 ABIE53_002372: ABIE53_002372 - manganese transport protein, at 2,661,635 to 2,662,930 _002372 ABIE53_002373: ABIE53_002373 - outer membrane phospholipase A, at 2,663,225 to 2,664,589 _002373 ABIE53_002374: ABIE53_002374 - putative Fe-S protein YdhL (DUF1289 family), at 2,664,710 to 2,664,913 _002374
Group Condition ABIE53_002370 ABIE53_002371 ABIE53_002372 ABIE53_002373 ABIE53_002374
stress R2A with Tricalcium phosphate 0.5 g/L -1.7 -0.7 -0.3 -0.1 N.D.
carbon source Shikimic Acid 5 mM (C) -0.5 -1.1 -0.2 -0.2 N.D.
carbon source Laminarin 10 g/L (C) -0.7 -0.8 -0.4 -0.1 N.D.
carbon source Shikimic Acid 5 mM (C) -0.9 -0.8 -0.1 -0.1 N.D.
carbon source Tween 20 (C) -0.6 +0.5 -1.4 -0.3 N.D.
stress R2A with Tricalcium phosphate 0.5 g/L -0.8 -0.7 +0.1 -0.2 N.D.
carbon source Laminarin 10 g/L (C) -0.6 -0.9 +0.2 -0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.1 +0.1 +0.1 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.4 -0.8 +0.4 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.3 -1.6 +0.1 N.D.
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut -0.8 +0.3 -0.7 +0.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +0.8 -1.6 -0.4 N.D.
carbon source L-Histidine (C) +0.1 +0.6 -1.3 -0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.4 -1.2 -0.2 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.6 -1.5 -0.4 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.3 -1.2 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.5 +0.6 +0.2 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.3 -1.0 -0.4 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.8 -1.0 -0.6 N.D.
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 +0.1 +0.9 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.3 +0.7 -0.7 +0.3 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 +0.5 -1.0 -0.0 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L +1.0 +0.7 -0.5 +0.0 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +1.1 +0.9 -0.7 -0.1 N.D.
plant outgrowth control Plant outgrowth control +1.3 +0.2 +0.4 -0.5 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +0.9 +0.6 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +0.8 +0.6 -0.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.3 +1.3 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.8 +0.3 +0.7 +0.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.6 +0.6 +0.2 N.D.
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