Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_002301	ABIE53_002302	ABIE53_002303	ABIE53_002304	ABIE53_002305
r2a outgrowth control	R2A outgrowth control	-0.0	N.D.	-1.5	-1.9	-0.4
carbon source	D-Lactate (C)	+0.4	N.D.	-0.9	-1.4	-0.6
carbon source	Cinnamic and Ethanols	-0.4	N.D.	-0.4	-1.1	-0.4
plant outgrowth control	Plant outgrowth control	-0.3	N.D.	-0.5	-1.3	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	N.D.	-0.8	-0.6	-1.0
carbon source	D-Fructose (C)	-0.1	N.D.	-0.3	-0.6	-1.3
carbon source	Laminarin 10 g/L (C)	+0.3	N.D.	-1.8	-1.0	+0.5
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	N.D.	-1.9	+0.2	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.4	N.D.	-0.1	-1.4	+0.3
carbon source	Acetylated xylan 10 g/L (C)	+0.7	N.D.	+0.3	-1.8	-0.8
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	N.D.	-0.2	-1.1	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.4	N.D.	-0.3	+0.4	-1.2
carbon source	D,L-Lactate (C)	-0.4	N.D.	-0.9	+0.5	-0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.3	N.D.	+0.4	-0.7	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	N.D.	-1.8	-0.6	+1.0
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	-0.3	N.D.	+0.6	-1.4	+0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	N.D.	-1.3	-0.4	-0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	N.D.	+0.6	-0.7	-0.5
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	-0.4	N.D.	-0.2	+0.7	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	N.D.	+0.7	+0.4	-1.9
carbon source	Shikimic Acid 5 mM (C)	+0.9	N.D.	+0.2	-0.6	-1.1
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-0.3	N.D.	+0.8	+0.4	-0.7
carbon source	D-Lactate (C)	-0.3	N.D.	-0.1	+1.3	-0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.3	N.D.	-0.4	+0.8	+0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	N.D.	+1.6	-0.4	-0.4
r2a shaking control	R2A shaking control	+0.3	N.D.	+0.9	+0.5	-0.7
carbon source	Acetylated xylan 10 g/L (C)	+0.8	N.D.	+1.1	-1.2	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	N.D.	-1.1	+2.3	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	N.D.	-0.3	+2.7	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.1	N.D.	+0.7	+0.9	+1.6