Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002282 and ABIE53_002283 are separated by 104 nucleotidesABIE53_002283 and ABIE53_002284 are separated by 311 nucleotidesABIE53_002284 and ABIE53_002285 are separated by 49 nucleotidesABIE53_002285 and ABIE53_002286 are separated by 111 nucleotides ABIE53_002282: ABIE53_002282 - RimJ/RimL family protein N-acetyltransferase, at 2,565,536 to 2,566,069 _002282 ABIE53_002283: ABIE53_002283 - 2-keto-3-deoxygluconate permease, at 2,566,174 to 2,567,190 _002283 ABIE53_002284: ABIE53_002284 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 2,567,502 to 2,568,350 _002284 ABIE53_002285: ABIE53_002285 - 2-deoxy-D-gluconate 3-dehydrogenase, at 2,568,400 to 2,569,200 _002285 ABIE53_002286: ABIE53_002286 - IclR family KDG regulon transcriptional repressor, at 2,569,312 to 2,570,190 _002286
Group Condition ABIE53_002282 ABIE53_002283 ABIE53_002284 ABIE53_002285 ABIE53_002286
carbon source L-Proline (C) -0.6 -0.4 -0.0 -1.7 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -0.1 -0.6 -1.1
carbon source L-Alanine (C) +0.1 -1.1 -0.1 -0.9 -0.7
stress R2A with Chloride 200 mM -0.3 -0.4 -0.2 -1.5 -0.2
carbon source Beta-Lactose (C) +0.1 -0.9 -0.2 -1.3 -0.2
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM +0.1 -0.3 +0.1 -1.8 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.7 +0.2 -1.0 -0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.1 -1.5 +0.2 -0.8 -0.3
carbon source D-Mannose (C) +0.1 -1.3 +0.1 -1.0 -0.1
stress M9 with Chloride 200 mM -0.7 +0.1 -0.2 -1.5 +0.2
r2a outgrowth control R2A outgrowth control -0.6 +0.0 -0.3 -1.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.6 -0.2 -0.3 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.1 -0.1 -1.4 +0.6
stress RCH2_defined_glucose_5mM with Sucrose 5 mM -0.8 +0.7 -0.1 -1.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.6 -0.3 +0.6 +0.1
stress R2A with PEG 6000 16 vol% +0.3 -0.6 -0.0 -1.2 +0.2
stress R2A with Chloride 200 mM +0.5 -0.5 -0.0 -1.7 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.7 +0.2 -1.0 -0.9
plant outgrowth control Plant outgrowth control -0.7 +0.4 +0.1 -1.3 +0.5
stress R2A with N-decanoyl-DL-Homoserine lactone 10 uM +0.5 -0.4 -0.1 -1.3 +0.5
carbon source D-Glucosamine Hydrochloride (C) +0.1 -0.5 -0.3 +0.9 -0.8
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.6 -1.3 +0.2 -0.4 -0.6
carbon source Shikimic Acid 5 mM (C) +0.4 -0.1 -0.4 +0.8 -0.7
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 -0.2 +0.3 +1.1 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +0.7 +0.2 -1.2 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 +0.4 +0.1 +1.6 -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -1.2 +0.7 +0.5 +1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.7 +0.5 +0.3 +1.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +0.5 +0.9 +1.3 +2.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.1 +1.0 +1.6 +1.8
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