Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002251 and ABIE53_002252 are separated by 145 nucleotidesABIE53_002252 and ABIE53_002253 are separated by 429 nucleotidesABIE53_002253 and ABIE53_002254 are separated by 181 nucleotidesABIE53_002254 and ABIE53_002255 are separated by 47 nucleotides ABIE53_002251: ABIE53_002251 - DNA-binding ferritin-like protein, at 2,530,048 to 2,530,407 _002251 ABIE53_002252: ABIE53_002252 - non-heme chloroperoxidase, at 2,530,553 to 2,531,548 _002252 ABIE53_002253: ABIE53_002253 - AraC family transcriptional regulator, at 2,531,978 to 2,532,955 _002253 ABIE53_002254: ABIE53_002254 - putative ATPase/DNA-binding winged helix-turn-helix (wHTH) protein, at 2,533,137 to 2,536,103 _002254 ABIE53_002255: ABIE53_002255 - hydroxymethylpyrimidine pyrophosphatase-like HAD family hydrolase, at 2,536,151 to 2,537,977 _002255
Group Condition ABIE53_002251 ABIE53_002252 ABIE53_002253 ABIE53_002254 ABIE53_002255
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.5 -0.5 +0.1 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 -0.9 -0.5 -0.1
stress RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM -0.3 -0.1 -1.1 -0.1 -0.6
stress R2A with Tricalcium phosphate 0.5 g/L -0.9 -0.4 +0.0 -0.3 -0.3
carbon source Laminarin 10 g/L (C) -0.8 -0.2 -0.0 +0.1 -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.3 -0.7 +0.5 -1.2
r2a outgrowth control R2A outgrowth control +0.3 -0.1 -0.8 -0.1 -0.5
carbon source Acetylated xylan 10 g/L (C) -1.3 -0.4 +0.7 -0.3 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 -0.2 +0.4 -0.9 -0.1
carbon source D-Sorbitol (C) -0.9 +0.2 +0.1 +0.1 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.3 -0.3 +0.3 -0.4
carbon source Acetylated xylan 10 g/L (C) -0.3 -0.3 +0.5 +0.3 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.5 +0.1 +0.1 -1.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 +0.4 +0.7 +0.0 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -0.5 +0.2 -0.2 -0.4
carbon source Shikimic Acid 5 mM (C) -0.7 -0.1 +0.7 +0.2 -0.2
stress RCH2_defined_glucose_5mM with D,L-Malic Acid 5 mM +0.5 -0.1 -0.3 +0.3 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 +0.4 +0.4 -0.3 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.2 -0.4 +0.2 -0.5
soil extract Shikimic Acid 5 mM in soil extract +0.4 +0.2 +0.3 -0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.8 +0.4 -0.4 -0.1 -0.3
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM +0.6 -0.0 +0.3 +0.2 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.3 +0.8 +0.4 +0.1
carbon source D-Lactate (C) -0.3 +0.0 +0.1 -0.3 +0.9
plant outgrowth control Plant outgrowth control +0.9 -0.1 +0.3 -0.6 +0.1
carbon source Laminarin 10 g/L (C) +0.1 +0.1 +0.6 +0.3 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 -0.1 -0.2 -0.1 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 +0.1 +0.5 -0.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.4 +0.5 -0.1 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 -0.1 -0.0 +0.1 +0.5
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