Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002206 and ABIE53_002207 are separated by 149 nucleotidesABIE53_002207 and ABIE53_002208 are separated by 37 nucleotidesABIE53_002208 and ABIE53_002209 are separated by 75 nucleotidesABIE53_002209 and ABIE53_002210 are separated by 13 nucleotides ABIE53_002206: ABIE53_002206 - nitrite reductase (NADH) small subunit, at 2,478,184 to 2,478,537 _002206 ABIE53_002207: ABIE53_002207 - NNP family nitrate/nitrite transporter-like MFS transporter, at 2,478,687 to 2,480,054 _002207 ABIE53_002208: ABIE53_002208 - methyl-accepting chemotaxis protein, at 2,480,092 to 2,480,814 _002208 ABIE53_002209: ABIE53_002209 - putative Mg2+ transporter-C (MgtC) family protein, at 2,480,890 to 2,481,390 _002209 ABIE53_002210: ABIE53_002210 - putative porin, at 2,481,404 to 2,482,585 _002210
Group Condition ABIE53_002206 ABIE53_002207 ABIE53_002208 ABIE53_002209 ABIE53_002210
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.3 -3.2 -0.4 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 -3.4 -0.6 -0.3
carbon source butyrate (C) N.D. -0.1 -3.6 -0.7 +0.1
nitrogen source histamine 2mM N source N.D. -0.5 -4.1 +0.3 +0.1
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound N.D. -0.5 -3.8 -0.1 +0.3
stress M9 with Chloride 200 mM N.D. -0.4 -3.5 -0.1 +0.1
stress RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM N.D. +0.2 -3.6 -0.4 -0.0
stress R2A with Tricalcium phosphate 0.5 g/L N.D. -0.8 -1.8 -1.3 -0.0
stress R2A with Chloride 200 mM N.D. -0.7 -3.4 +0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.0 -2.6 +0.2 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.0 -2.1 +0.1 -0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.6 -3.1 +0.6 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.0 -3.2 -0.4 +0.3
stress M9 with 3-methyl-2-butenol 2 g/L N.D. -0.3 -2.7 -0.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.1 -1.8 +0.1 -0.3
stress M9 with Chloride 200 mM N.D. -0.6 -2.0 -0.4 -0.2
carbon source Inosine (C) N.D. -0.4 -2.3 -0.3 -0.1
carbon source Glucuronamide (C) N.D. -0.8 -1.9 -0.3 +0.2
stress R2A with Chloride 200 mM N.D. -0.1 -3.5 +0.3 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.7 -2.5 +0.3 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 -2.7 -0.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 -2.1 +0.6 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.7 -2.1 +0.2 -0.5
stress RCH2_defined_glucose_5mM with Sucrose 5 mM N.D. +0.9 -2.9 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.3 -2.4 +0.2 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 -2.3 +0.5 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.2 +1.3 -0.1 -0.5
r2a outgrowth control R2A outgrowth control N.D. -0.9 +1.8 -0.3 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 +2.3 -0.5 -0.0
nitrogen source Ammonium chloride 0.5 mM (N) N.D. +0.7 +2.5 +0.1 -0.0
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