Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002161 and ABIE53_002162 are separated by 77 nucleotidesABIE53_002162 and ABIE53_002163 are separated by 0 nucleotidesABIE53_002163 and ABIE53_002164 are separated by 97 nucleotidesABIE53_002164 and ABIE53_002165 are separated by 24 nucleotides ABIE53_002161: ABIE53_002161 - folate-binding protein YgfZ, at 2,422,111 to 2,423,187 _002161 ABIE53_002162: ABIE53_002162 - UPF0755 protein, at 2,423,265 to 2,424,275 _002162 ABIE53_002163: ABIE53_002163 - dTMP kinase, at 2,424,276 to 2,424,896 _002163 ABIE53_002164: ABIE53_002164 - DNA polymerase-3 subunit delta', at 2,424,994 to 2,426,037 _002164 ABIE53_002165: ABIE53_002165 - L-amino acid N-acyltransferase YncA, at 2,426,062 to 2,426,658 _002165
Group Condition ABIE53_002161 ABIE53_002162 ABIE53_002163 ABIE53_002164 ABIE53_002165
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.3 N.D. N.D. -3.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.4 N.D. N.D. -2.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.1 N.D. N.D. -3.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.1 N.D. N.D. -2.9
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.6 N.D. N.D. -3.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.1 N.D. N.D. -2.1
stress R2A with 3-methyl-3-butenol 4.5 g/L N.D. -1.9 N.D. N.D. -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.5 N.D. N.D. -2.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 N.D. N.D. -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 N.D. N.D. -1.5
stress R2A with 3-methyl-3-butenol 4.5 g/L N.D. -1.7 N.D. N.D. +0.1
stress R2A with 3-methyl-3-butenol 4.5 g/L N.D. -1.5 N.D. N.D. -0.1
stress RCH2_defined_glucose_5mM with Lumazine 5 mM N.D. -1.3 N.D. N.D. -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.3 N.D. N.D. -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.3 N.D. N.D. -1.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 N.D. N.D. -1.5
stress RCH2_defined_glucose_5mM with Lumazine 5 mM N.D. -1.3 N.D. N.D. -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.6 N.D. N.D. -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.3 N.D. N.D. -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.3 N.D. N.D. -1.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.4 N.D. N.D. -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.4 N.D. N.D. -1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.5 N.D. N.D. -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.2 N.D. N.D. -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +1.0 N.D. N.D. +0.6
stress M9 with 3-methyl-2-butenol 2 g/L N.D. +1.6 N.D. N.D. +0.1
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. +2.9 N.D. N.D. -0.3
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. +2.8 N.D. N.D. -0.1
carbon source Azelaic 20 mM (C) N.D. +3.2 N.D. N.D. +0.1
carbon source Azelaic 20 mM (C) N.D. +3.4 N.D. N.D. +0.2
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