Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002120 and ABIE53_002121 are separated by 5 nucleotidesABIE53_002121 and ABIE53_002122 are separated by 2 nucleotidesABIE53_002122 and ABIE53_002123 are separated by 12 nucleotidesABIE53_002123 and ABIE53_002124 are separated by 212 nucleotides ABIE53_002120: ABIE53_002120 - putative O-methyltransferase YrrM, at 2,377,595 to 2,378,311 _002120 ABIE53_002121: ABIE53_002121 - NAD-dependent dihydropyrimidine dehydrogenase PreA subunit, at 2,378,317 to 2,378,613 _002121 ABIE53_002122: ABIE53_002122 - hypothetical protein, at 2,378,616 to 2,378,924 _002122 ABIE53_002123: ABIE53_002123 - RNA polymerase sigma factor (sigma-70 family), at 2,378,937 to 2,379,518 _002123 ABIE53_002124: ABIE53_002124 - putative MFS family arabinose efflux permease, at 2,379,731 to 2,380,918 _002124
Group Condition ABIE53_002120 ABIE53_002121 ABIE53_002122 ABIE53_002123 ABIE53_002124
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.6 N.D. -1.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.8 N.D. -0.3 -0.7
stress R2A with Tricalcium phosphate 0.5 g/L -0.4 -0.8 N.D. -0.6 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.5 N.D. -1.7 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 +0.1 N.D. -1.8 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.2 N.D. -1.3 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -1.5 N.D. -0.2 +0.2
carbon source Laminarin 10 g/L (C) -0.2 -0.6 N.D. -0.5 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -1.0 N.D. -0.5 -0.3
plant outgrowth control Plant outgrowth control -0.1 -0.9 N.D. -0.4 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.7 N.D. -1.0 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.7 N.D. -0.3 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.8 N.D. -0.8 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.4 N.D. -1.3 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.4 -0.1 N.D. -1.1 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -1.8 N.D. +0.3 -0.1
carbon source L-Histidine (C) -0.3 -1.0 N.D. -0.3 +0.6
r2a outgrowth control R2A outgrowth control -0.1 -0.9 N.D. +0.4 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.5 N.D. -0.4 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 +0.2 N.D. -1.3 +0.6
r2a outgrowth control R2A outgrowth control -0.0 -1.2 N.D. +0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.5 N.D. -1.1 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.8 N.D. -0.1 +1.0
stress R2A with Chloride 200 mM +0.4 -0.8 N.D. +0.6 -0.2
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 +0.6 N.D. -0.5 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +0.9 N.D. +0.0 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 +1.0 N.D. -0.4 +0.4
stress M9 with 3-methyl-2-butenol 2 g/L +0.2 +0.8 N.D. +0.3 +0.4
stress M9 with 3-methyl-2-butenol 2 g/L +0.3 +0.8 N.D. +0.4 +0.4
stress M9 with 3-methyl-2-butenol 2 g/L +0.2 +1.2 N.D. +0.3 +0.3
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