Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_002092 and ABIE53_002093 are separated by 110 nucleotidesABIE53_002093 and ABIE53_002094 are separated by 62 nucleotidesABIE53_002094 and ABIE53_002095 are separated by 199 nucleotidesABIE53_002095 and ABIE53_002096 are separated by 183 nucleotides ABIE53_002092: ABIE53_002092 - large conductance mechanosensitive channel, at 2,344,707 to 2,345,153 _002092 ABIE53_002093: ABIE53_002093 - threonine dehydratase, at 2,345,264 to 2,346,298 _002093 ABIE53_002094: ABIE53_002094 - acetylornithine deacetylase, at 2,346,361 to 2,347,608 _002094 ABIE53_002095: ABIE53_002095 - transcription-repair coupling factor (superfamily II helicase), at 2,347,808 to 2,351,290 _002095 ABIE53_002096: ABIE53_002096 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,351,474 to 2,352,124 _002096
Group Condition ABIE53_002092 ABIE53_002093 ABIE53_002094 ABIE53_002095 ABIE53_002096
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.6 -1.0 -2.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.5 -0.7 -0.2 N.D.
soil extract Indole-3-pyruvic 5 mM in soil extract -1.0 -0.5 -0.2 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -0.4 -0.2 -0.7 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.3 -0.8 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -0.9 -0.7 -0.1 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.3 +0.1 +0.1 -1.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.6 -0.2 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -1.1 -0.1 -0.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.3 -0.5 -0.2 -1.1 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.5 -1.0 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 -0.3 -0.3 -1.5 N.D.
stress R2A with PEG 6000 16 vol% +0.7 -0.1 -0.1 -2.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -0.4 +0.2 -0.7 N.D.
stress R2A with PEG 6000 16 vol% +0.6 +0.0 -0.0 -1.9 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.0 +0.3 +0.1 -0.7 N.D.
stress R2A with PEG 6000 16 vol% +0.8 +0.1 -0.3 -1.6 N.D.
stress R2A with 3-methyl-3-butenol 4.5 g/L +0.5 -0.1 -0.3 -1.2 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 +0.3 +0.3 -0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 -1.2 -0.0 -0.4 N.D.
stress R2A with Propan-1-ol 13 g/L +0.8 -0.4 -0.1 -1.1 N.D.
stress R2A with Propan-1-ol 13 g/L +0.9 -0.2 -0.3 -1.1 N.D.
stress R2A with Isopropyl alcohol 21 g/L +0.9 -0.4 -0.3 -0.8 N.D.
stress R2A with PEG 6000 16 vol% +1.1 +0.1 -0.1 -1.7 N.D.
stress R2A with Propan-1-ol 13 g/L +1.0 -0.2 -0.2 -1.1 N.D.
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.4 -0.5 -0.3 -0.4 N.D.
r2a no shaking R2A no shaking -0.5 +0.0 -0.2 +1.3 N.D.
stress M9 with PEG 6000 16 vol% +1.3 -0.0 -0.1 -0.5 N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound -0.2 -0.1 +0.1 +1.6 N.D.
biofilm biofilm; planktonic cells from 96 well plate assay in R2A +0.1 +0.1 -0.1 +1.6 N.D.
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