Fitness for 5 genes in Paraburkholderia graminis OAS925

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 488 experiments or choose conditions or try the comparative fitness browser

500 ntABIE53_002073 and ABIE53_002074 overlap by 19 nucleotidesABIE53_002074 and ABIE53_002075 are separated by 205 nucleotidesABIE53_002075 and ABIE53_002076 are separated by 34 nucleotidesABIE53_002076 and ABIE53_002077 are separated by 117 nucleotides ABIE53_002073: ABIE53_002073 - cystathionine beta-lyase/cystathionine gamma-synthase, at 2,322,741 to 2,323,046 _002073 ABIE53_002074: ABIE53_002074 - cystathionine beta-lyase, at 2,323,028 to 2,323,927 _002074 ABIE53_002075: ABIE53_002075 - hypothetical protein, at 2,324,133 to 2,324,594 _002075 ABIE53_002076: ABIE53_002076 - hypothetical protein, at 2,324,629 to 2,324,760 _002076 ABIE53_002077: ABIE53_002077 - phosphoserine phosphatase, at 2,324,878 to 2,325,723 _002077
Group Condition ABIE53_002073 ABIE53_002074 ABIE53_002075 ABIE53_002076 ABIE53_002077
stress RCH2_defined_glucose_5mM with Adenine 5 mM -3.7 -0.9 -0.1 +0.4 -3.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 -0.2 -0.5 -1.4 -2.8
stress RCH2_defined_glucose_5mM with Adenine 5 mM -1.3 -1.1 +0.0 -0.8 -3.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.0 -0.8 -0.3 -0.8 -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.3 -0.4 -2.8 -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.4 -1.4 +0.6 -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.4 -0.8 -3.1 -2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -0.8 +0.0 -0.7 -3.6
carbon source 2,3-dihydroxybenzoic and Ethanols -1.3 -0.1 -0.5 -0.5 -3.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 -0.4 -0.6 -0.0 -2.0
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -1.4 -0.0 +0.3 -1.5 -3.3
stress Growth in presence of pinene -0.2 -0.3 -0.5 -1.1 -3.8
carbon source Ethanol (C) -0.7 -0.1 -0.6 -0.8 -3.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.8 -1.1 -0.8 -1.3 -2.9
soil extract D,L-Malic Acid 5 mM in soil extract -0.2 +0.1 +0.3 -2.0 -3.4
plant outgrowth control Plant outgrowth control -0.7 -0.3 -0.7 +0.5 -4.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 +0.1 -0.5 -2.1 -3.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.2 -0.5 +0.5 -4.1
stress RCH2_defined_glucose_5mM with Sucrose 5 mM +0.7 +0.1 +0.3 -2.3 -2.9
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.5 -0.5 +0.1 +1.0 -3.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 -0.0 -0.9 -1.0 -3.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.2 +0.4 -0.8 -0.6 -3.7
stress RCH2_defined_glucose_5mM with 2-Deoxy-D-glucose 5 mM +1.1 +0.3 -0.2 -0.7 -3.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.8 +0.4 -0.4 +1.2 -1.2
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +3.3 -0.8 -0.3 -1.2 -3.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +3.1 -1.1 +0.3 -0.9 -2.8
phage Burk1_100 +2.1 -0.2 -0.4 +0.9 -2.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +3.1 -0.4 -0.2 +0.7 -3.4
carbon source D-Glucose-6-Phosphate (C) +2.5 +0.9 -0.0 -1.4 -1.2
carbon source Tween 20 (C) +3.0 +0.6 -0.2 -1.4 -1.1
remove
ABIE53_002073
plot		 remove
ABIE53_002074
plot		 remove
ABIE53_002075		 remove
ABIE53_002076
plot		 remove
ABIE53_002077
plot