Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001982	ABIE53_001983	ABIE53_001984	ABIE53_001985	ABIE53_001986
stress	RCH2_defined_glucose_5mM with Cinnamic 5 mM	-0.0	-0.3	-0.1	-3.3	-1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	-2.8	+0.1	-0.6	-0.5
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	+0.2	-1.6	+0.1	-1.7	+0.3
soil extract	Sucrose 5 mM in soil extract	-0.0	-1.1	+0.0	-1.2	-0.4
carbon source	L-Proline (C)	-0.3	+0.3	+0.2	-2.4	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.4	-0.3	+0.1	-2.6	-0.0
carbon source	Glucuronamide (C)	-0.0	-1.7	+0.3	-1.8	+1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.2	-1.2	+0.2	-1.3	+0.3
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.0	-1.2	+0.1	-1.2	+0.2
soil extract	D,L-Malic Acid 5 mM in soil extract	-0.1	+0.5	-0.1	-1.0	-1.3
carbon source	Acetylated xylan 10 g/L (C)	-0.0	-1.8	+0.0	+0.6	-0.7
stress	R2A with N-decanoyl-DL-Homoserine lactone 10 uM	+0.1	-1.1	+0.0	-1.3	+0.4
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-0.0	-1.2	+0.2	-1.1	+0.3
stress	R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM	+0.1	-1.0	+0.1	-1.5	+0.6
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.0	-1.7	-0.0	-1.3	+1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.2	-1.0	+0.2	-1.3	+0.3
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-0.1	-0.2	-0.0	-1.8	+0.7
nitrogen source	Ammonium chloride 30 mM (N)	+0.0	-1.0	+0.1	-1.2	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+0.4	+0.3	-1.1	-0.7
nitrogen source	Ammonium chloride 0.5 mM (N)	+0.1	-0.7	+0.2	-1.6	+0.5
soil extract	Indole-3-pyruvic 5 mM in soil extract	+0.3	-0.7	+0.3	+0.4	-1.5
stress	R2A with p-Coumaric 0.5 mM	+0.1	-0.7	+0.1	-1.4	+0.7
carbon source	D-Serine (C)	+0.0	-1.5	+0.2	+0.9	-0.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-2.2	+0.3	-0.4	+1.1
carbon source	Glucuronamide (C)	-0.0	-2.0	+0.0	+0.1	+1.0
carbon source	Adenosine (C)	-0.0	-1.0	+0.2	+0.8	-0.8
carbon source	4-Hydroxybenzoic Acid (C)	+0.1	-0.5	+0.1	+0.8	-1.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.2	-0.9	+0.0	+1.3	-0.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.6	-0.8	+0.3	+0.6	-0.9
carbon source	D-Glucose (C)	-0.3	-1.0	+0.2	+0.9	+0.3