Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001936	ABIE53_001937	ABIE53_001938	ABIE53_001939	ABIE53_003823
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	+0.4	+0.1	-0.5	+0.4	-3.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.5	+0.4	-0.4	-0.1	-2.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	-0.2	+0.4	-0.4	-2.3
r2a outgrowth control	R2A outgrowth control	-0.5	-0.3	+1.0	-0.1	-3.1
plant outgrowth control	Plant outgrowth control	-2.3	-0.7	-0.5	-0.0	+1.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.2	-0.9	+0.9	-0.1	-1.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.5	+0.8	+0.2	-0.5	-1.3
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.9	+0.2	-1.2	+0.2	+0.9
carbon source	Acetylated xylan 10 g/L (C)	-0.3	+0.1	-0.5	-1.1	+1.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.5	+0.2	+1.6	-0.4	-1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-0.9	+0.3	-0.5	+1.6
plant outgrowth control	Plant outgrowth control	-0.4	+0.1	-1.1	-0.4	+2.1
carbon source	D-Galactose (C)	-0.5	-0.6	-0.6	+0.4	+2.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.8	+0.4	+1.3	-0.2	-0.8
carbon source	D-Mannose (C)	+0.2	-0.2	-1.4	+0.6	+2.4
carbon source	D-Galacturonic Acid (C)	-0.9	+0.2	+0.3	+0.3	+2.2
r2a outgrowth control	R2A outgrowth control	-0.1	-0.1	+0.1	-0.6	+2.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.9	-0.2	+0.8	-0.5	+1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.2	+0.8	+0.1	+2.0
carbon source	D-Glucose (C)	-0.4	+0.2	-0.3	+0.5	+2.5
carbon source	L-Histidine (C)	-0.3	+0.2	-0.4	+0.4	+2.6
carbon source	D-Sorbitol (C)	+0.3	-0.2	-0.2	+0.3	+2.4
carbon source	D-Glucose-6-Phosphate (C)	-0.8	+0.1	+0.2	+0.3	+2.9
phage	Burk1_100	+0.2	+0.4	+0.8	+0.4	+1.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.7	+0.5	+0.6	+0.4	+1.2
plant outgrowth control	Plant outgrowth control	+0.4	+0.0	-0.2	-0.4	+3.8
carbon source	D-Fructose (C)	+0.5	-0.2	-0.8	+0.8	+3.4
plant outgrowth control	Plant outgrowth control	-0.4	+0.0	-0.4	+0.0	+4.4
carbon source	D-Sorbitol (C)	+0.4	+0.4	+0.1	+0.3	+2.6
carbon source	Tween 20 (C)	+0.4	+0.3	+0.3	+0.3	+2.7