Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001907 and ABIE53_001908 are separated by 24 nucleotidesABIE53_001908 and ABIE53_001909 are separated by 120 nucleotidesABIE53_001909 and ABIE53_001910 are separated by 107 nucleotidesABIE53_001910 and ABIE53_001911 are separated by 181 nucleotides ABIE53_001907: ABIE53_001907 - IclR family acetate operon transcriptional repressor, at 2,156,062 to 2,156,847 _001907 ABIE53_001908: ABIE53_001908 - DNA-binding transcriptional LysR family regulator, at 2,156,872 to 2,157,741 _001908 ABIE53_001909: ABIE53_001909 - putative MFS transporter, at 2,157,862 to 2,159,253 _001909 ABIE53_001910: ABIE53_001910 - glycine/D-amino acid oxidase-like deaminating enzyme, at 2,159,361 to 2,160,479 _001910 ABIE53_001911: ABIE53_001911 - hypothetical protein, at 2,160,661 to 2,160,780 _001911
Group Condition ABIE53_001907 ABIE53_001908 ABIE53_001909 ABIE53_001910 ABIE53_001911
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.2 -0.8 -0.4 -0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.3 -0.0 -1.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -1.0 +0.4 +0.0 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.8 -0.3 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.8 -0.7 -0.4 -0.2 N.D.
r2a outgrowth control R2A outgrowth control -1.3 -0.6 -0.4 +0.2 N.D.
phage Burk1_100 -1.9 +0.2 -0.0 -0.3 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.7 +0.3 -0.3 N.D.
stress M9 with Chloride 200 mM -0.7 -1.3 -0.1 +0.2 N.D.
r2a outgrowth control R2A outgrowth control -1.2 -0.7 -0.6 +0.7 N.D.
stress M9 with Chloride 200 mM +0.0 -1.1 -0.8 +0.1 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.3 -0.8 -0.9 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.6 -0.1 +0.3 N.D.
carbon source Laminarin 10 g/L (C) +0.2 -1.4 -0.4 +0.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 +0.3 +0.1 -0.5 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -0.9 -0.2 +0.5 N.D.
carbon source Acetylated xylan 10 g/L (C) -0.4 -1.3 +0.0 +0.6 N.D.
plant outgrowth control Plant outgrowth control -1.3 +0.5 -0.2 -0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.1 +0.5 +0.5 -0.6 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.6 -1.2 -0.6 +0.5 N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.7 -0.7 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 -1.0 +0.7 -0.5 N.D.
carbon source Acetylated xylan 10 g/L (C) +0.8 -0.8 -0.2 -0.3 N.D.
carbon source butyrate (C) -1.1 +0.5 -0.1 +0.4 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.3 -0.3 -0.4 -0.8 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 -1.3 -0.2 +0.3 N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 +0.3 +0.2 +0.5 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.4 -0.7 +0.0 +0.0 N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +1.7 +0.1 +0.1 N.D.
stress M9 with 3-methyl-2-butenol 2 g/L +0.9 +0.9 +0.3 +0.5 N.D.
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