Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001875	ABIE53_001876	ABIE53_001877	ABIE53_001878	ABIE53_001879
soil extract	2,3-dihydroxybenzoic 5 mM in soil extract	-1.1	-1.6	-0.7	-0.2	+0.0
soil extract	2,3-dihydroxybenzoic 5 mM in soil extract	-1.2	-0.8	-1.0	+0.1	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.1	-0.3	+0.4	-1.9
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-0.6	+0.3	-0.1	-0.3	-1.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.1	+0.0	+0.4	-3.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.7	-0.3	+0.0	-0.1	-2.5
stress	M9 with 3-methyl-2-butenol 2 g/L	+0.3	+0.1	+0.2	-0.4	-2.3
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	+0.1	-0.4	+0.0	-0.3	-1.5
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM	-0.1	-0.2	-0.0	+0.1	-1.8
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.5	+0.6	-0.0	-0.1	-1.8
carbon source	Glucuronamide (C)	+0.1	-0.1	+0.1	+0.0	-1.9
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.2	-0.4	+0.0	+0.6	-1.7
carbon source	Inosine (C)	+0.2	-0.6	-0.2	+0.3	-1.3
stress	RCH2_defined_glucose_5mM with Lumichrome 5 mM	+0.1	-0.3	-0.4	+0.3	-1.2
carbon source	L-Proline (C)	-0.3	-0.3	+0.3	+0.2	-1.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.2	-0.2	-0.9	-0.5	+0.7
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.2	+0.7	-0.1	-0.8	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.4	-0.1	+0.2	+0.1	-1.4
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	+0.4	+0.1	-0.4	+0.5	-1.0
stress	R2A with Abscisic 10 uM	+0.3	+0.5	+0.0	+0.2	-1.4
carbon source	Shikimic Acid 5 mM (C)	+0.5	-0.4	-0.7	+0.2	+0.4
carbon source	Acetylated xylan 10 g/L (C)	+0.5	-0.8	-0.5	+0.0	+0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.3	+0.7	+0.5	-0.5	-0.2
plant outgrowth control	Plant outgrowth control	+0.0	-0.6	-0.6	+0.0	+1.4
plant outgrowth control	Plant outgrowth control	+0.1	-0.4	-0.4	+0.3	+1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	+0.1	-0.5	-0.5	+1.8
carbon source	Acetylated xylan 10 g/L (C)	+0.8	+0.1	-0.4	-0.2	+0.9
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	-0.8	-0.1	+0.8	+1.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	+0.4	+0.4	+0.4	+1.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.5	-0.2	+0.1	+1.8