Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001868	ABIE53_001869	ABIE53_001870	ABIE53_001871	ABIE53_001872
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.1	-0.8	-0.2	-0.6	+0.2
stress	M9 with 3-methyl-3-butenol 4.5 g/L	+0.0	-4.1	+0.2	-0.1	-0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.4	-1.9	+0.2	-1.2	+0.2
soil extract	Sucrose 5 mM in soil extract	-1.0	-3.2	-0.0	+0.6	+0.2
carbon source	m-Inositol (C)	-0.8	-2.8	-0.0	-0.5	+0.7
carbon source	Beta-Lactose (C)	-0.4	-3.0	+0.1	-0.4	+0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.8	-2.4	+0.2	-0.4	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.7	-2.6	+0.5	-0.5	+0.6
carbon source	Tween 20 (C)	-0.5	-2.3	+0.2	-0.5	+0.4
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-1.2	-1.7	+0.2	-0.2	+0.2
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.8	-0.8	-0.0	-0.5	+0.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-2.2	+0.1	+0.7	-0.9
nitrogen source	histamine 2mM N source	-1.4	-1.4	-0.0	+0.2	+0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.3	-2.5	-0.1	-0.2	+0.3
carbon source	Acetylated xylan 10 g/L (C)	-2.5	-0.8	+0.5	+0.3	+0.2
soil extract	Serotonin 5 mM in soil extract	-1.6	-1.4	+0.0	+0.3	+0.4
carbon source	L-Serine (C)	+0.4	-2.4	-0.2	-0.2	+0.1
carbon source	Adenosine (C)	-1.2	-1.6	+0.5	+0.1	+0.3
plant outgrowth control	Plant outgrowth control	+0.4	-1.3	-0.1	-1.2	+0.4
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.2	-2.0	-0.3	+0.0	+0.6
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	+0.9	-2.4	-0.5	+0.3	+0.3
carbon source	D-Cellobiose (C)	+0.5	-2.0	+0.1	-0.3	+0.3
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	-2.8	+0.2	+0.4	+0.3
carbon source	Tween 20 (C)	+0.3	-2.4	+0.4	-0.4	+0.8
stress	RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM	+0.8	-2.7	+0.0	+0.5	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.6	-2.3	+0.6	+0.9	+0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.3	+2.0	-0.4	-0.1	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	+2.2	+0.1	-1.4	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+1.9	+0.2	+0.9	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+1.1	+2.4	+0.1	+0.1	+0.5