Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001821 and ABIE53_001822 are separated by 380 nucleotidesABIE53_001822 and ABIE53_001823 are separated by 405 nucleotidesABIE53_001823 and ABIE53_001824 are separated by 14 nucleotidesABIE53_001824 and ABIE53_001825 overlap by 168 nucleotides ABIE53_001821: ABIE53_001821 - hypothetical protein, at 2,058,966 to 2,059,220 _001821 ABIE53_001822: ABIE53_001822 - putative transposase, at 2,059,601 to 2,060,002 _001822 ABIE53_001823: ABIE53_001823 - DNA-binding transcriptional LysR family regulator, at 2,060,408 to 2,061,310 _001823 ABIE53_001824: ABIE53_001824 - aspartate/methionine/tyrosine aminotransferase, at 2,061,325 to 2,062,869 _001824 ABIE53_001825: ABIE53_001825 - hypothetical protein, at 2,062,702 to 2,063,031 _001825
Group Condition ABIE53_001821 ABIE53_001822 ABIE53_001823 ABIE53_001824 ABIE53_001825
carbon source D-Xylose (C) N.D. N.D. -0.8 -0.3 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.0 -0.0 -1.8
soil extract Serotonin 5 mM in soil extract N.D. N.D. -0.7 -0.1 -1.0
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -0.5 -0.4 -0.9
carbon source D-Galactose (C) N.D. N.D. -0.7 -0.3 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.4 +0.4 -0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.7 -0.1 -0.9
r2a outgrowth control R2A outgrowth control N.D. N.D. -0.2 +0.1 -1.4
carbon source Glucuronamide (C) N.D. N.D. -0.5 +0.2 -1.2
carbon source Laminarin 10 g/L (C) N.D. N.D. -0.7 +0.2 -0.9
carbon source L-Alanine (C) N.D. N.D. -0.1 +0.2 -1.5
carbon source L-Proline (C) N.D. N.D. -1.0 +0.3 -0.6
plant outgrowth control Plant outgrowth control N.D. N.D. +0.6 +0.2 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.7 +0.0 -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.4 +0.5 -1.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. -1.2 +0.1 +0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.9 +0.2 -0.7
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. N.D. -0.3 +0.3 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. -0.3 +0.2 +1.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +1.1 +0.4 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +1.4 +0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.8 +0.1 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. +0.6 +0.5 +0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. N.D. +1.1 +0.4 +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +2.2 -0.0 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.7 +0.5 +0.9
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. +0.6 +0.2 +1.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. N.D. +2.4 +0.1 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +1.3 +0.7 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +1.0 +0.8 +1.4
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ABIE53_001821
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ABIE53_001822
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ABIE53_001824
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ABIE53_001825
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