Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001771 and ABIE53_001772 are separated by 2 nucleotidesABIE53_001772 and ABIE53_001773 are separated by 9 nucleotidesABIE53_001773 and ABIE53_001774 overlap by 17 nucleotidesABIE53_001774 and ABIE53_001775 are separated by 299 nucleotides ABIE53_001771: ABIE53_001771 - arginine N-succinyltransferase, at 1,995,393 to 1,996,430 _001771 ABIE53_001772: ABIE53_001772 - succinylglutamic semialdehyde dehydrogenase, at 1,996,433 to 1,997,896 _001772 ABIE53_001773: ABIE53_001773 - succinylarginine dihydrolase, at 1,997,906 to 1,999,246 _001773 ABIE53_001774: ABIE53_001774 - succinylglutamate desuccinylase, at 1,999,230 to 2,000,282 _001774 ABIE53_001775: ABIE53_001775 - lysine/arginine/ornithine transport system substrate-binding protein, at 2,000,582 to 2,001,376 _001775
Group Condition ABIE53_001771 ABIE53_001772 ABIE53_001773 ABIE53_001774 ABIE53_001775
carbon source L-Arginine (C) -3.0 -4.1 N.D. -5.2 -3.1
carbon source L-Arginine (C) -3.4 -2.6 N.D. -3.3 -1.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.4 -3.5 N.D. -2.1 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 -3.7 N.D. -3.3 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.4 -4.6 N.D. -0.3 -1.5
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -2.9 -4.6 N.D. -1.2 -0.2
lb_dap plate control LB_DAP agar plate, outgrowth in LB -2.6 -4.1 N.D. -1.3 -0.7
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -2.1 -4.5 N.D. -0.9 -0.5
carbon source casaminos (C) -2.7 -2.2 N.D. -2.3 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.7 -2.7 N.D. -0.4 -1.2
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut -1.4 -4.0 N.D. -1.8 -0.6
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.7 -4.3 N.D. -1.4 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -4.6 N.D. -1.2 -0.6
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.6 -4.2 N.D. -1.7 +0.9
stress R2A with Quartz_sand 500 g/L -2.4 -4.0 N.D. -1.0 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.1 -2.1 N.D. -1.1 -1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.2 -3.8 N.D. -1.2 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 -2.8 N.D. -2.0 -0.6
motility_chemotaxis Motility_chemotaxis, R2A; inner cut -1.1 -3.9 N.D. -1.2 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.2 -4.2 N.D. -0.9 -0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -3.1 N.D. -0.2 -1.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.6 -3.1 N.D. -0.3 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.8 -3.9 N.D. -0.0 -0.4
stress Growth in presence of pinene -2.9 -3.9 N.D. -1.1 +1.0
wm3064 conjugation control LB_DAP agar plate conjugation with WM3064, outgrowth in LB -2.3 -4.1 N.D. -0.7 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -4.3 N.D. -0.9 +0.2
phage Burk1_100 +1.1 -3.6 N.D. -1.2 -2.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 -4.0 N.D. +0.3 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 -3.7 N.D. -0.9 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.6 +4.2 N.D. -0.4 -0.9
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