Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001751	ABIE53_001752	ABIE53_001753	ABIE53_001754	ABIE53_001755
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-0.6	-0.7	-0.2	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-0.8	-0.8	-0.2	-0.1
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.5	-1.1	+0.3	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.4	+0.2	-0.3	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.5	-0.7	+0.2	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.3	-0.3	+0.4	-1.0
carbon source	Xylitol (C)	N.D.	-0.2	-0.9	+0.4	-0.4
carbon source	Beta-Lactose (C)	N.D.	+0.3	-0.3	-0.3	-0.9
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.2	+0.4	-0.6	-0.6
carbon source	L-Lactate (C)	N.D.	-0.4	+0.1	+0.3	-0.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	-0.6	-0.4	-0.4	+0.5
carbon source	L-Proline (C)	N.D.	-0.2	-0.5	+0.6	-0.5
carbon source	D-Glucose-6-Phosphate (C)	N.D.	-0.5	-0.3	+0.8	-0.5
carbon source	D-Lactate (C)	N.D.	-0.2	+0.1	+0.7	-1.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-1.0	+1.0	-1.2	+0.9
stress	RCH2_defined_glucose_5mM with Chlorogenic 1 mM	N.D.	-0.4	+0.4	+0.4	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+0.4	-0.5	+0.7	-0.7
carbon source	Laminarin 10 g/L (C)	N.D.	+0.3	+0.3	-0.9	+0.4
carbon source	D-Galactose (C)	N.D.	-0.3	-0.3	+1.0	-0.2
carbon source	D-Fructose (C)	N.D.	-0.3	-0.2	+1.2	-0.4
carbon source	Acetylated xylan 10 g/L (C)	N.D.	+0.5	+0.8	-0.3	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.6	-0.1	+0.0	+1.1
stress	R2A with Quartz_sand 500 g/L	N.D.	+0.5	-0.5	+0.3	+0.3
carbon source	L-Histidine (C)	N.D.	-0.1	-0.4	+1.2	+0.1
carbon source	D-Mannose (C)	N.D.	-0.2	+0.1	+1.1	-0.2
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	N.D.	-0.0	+0.1	+1.3	-0.5
stress	RCH2_defined_glucose_5mM with Abietic Acid 5 mM	N.D.	-0.4	+0.5	+0.4	+0.5
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	N.D.	+0.6	-0.3	+0.3	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-0.3	+0.8	+0.3	+0.5
soil extract	Indole-3-pyruvic 5 mM in soil extract	N.D.	+0.2	+1.1	+0.1	+0.3