Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001717 and ABIE53_001718 are separated by 77 nucleotidesABIE53_001718 and ABIE53_001719 are separated by 97 nucleotidesABIE53_001719 and ABIE53_001720 are separated by 14 nucleotidesABIE53_001720 and ABIE53_001721 are separated by 116 nucleotides ABIE53_001717: ABIE53_001717 - hypothetical protein, at 1,937,548 to 1,938,483 _001717 ABIE53_001718: ABIE53_001718 - L-lysine exporter family protein LysE/ArgO, at 1,938,561 to 1,939,181 _001718 ABIE53_001719: ABIE53_001719 - LysR family transcriptional regulator (chromosome initiation inhibitor), at 1,939,279 to 1,940,172 _001719 ABIE53_001720: ABIE53_001720 - LysR family transcriptional regulator of abg operon, at 1,940,187 to 1,941,137 _001720 ABIE53_001721: ABIE53_001721 - hippurate hydrolase, at 1,941,254 to 1,942,426 _001721
Group Condition ABIE53_001717 ABIE53_001718 ABIE53_001719 ABIE53_001720 ABIE53_001721
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -0.2 -0.4 -4.1 +0.4
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.3 -0.2 -3.6 -0.1
plant outgrowth control Plant outgrowth control -0.0 +0.2 -0.2 -4.1 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.3 -0.1 -2.9 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.4 -1.0 -2.0 -0.4
carbon source Uridine (C) +0.2 +0.2 -0.0 -4.3 +0.1
stress RCH2_defined_glucose_5mM with Lumazine 5 mM -0.4 -0.0 +0.2 -2.5 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 +0.3 -1.3 -1.3 -0.9
stress M9 with Chloride 200 mM +0.3 +0.1 +1.0 -3.5 -1.1
plant outgrowth control Plant outgrowth control +0.1 -0.4 -0.0 -2.3 -0.6
carbon source Acetylated xylan 10 g/L (C) +0.1 -0.3 -0.6 -0.6 -1.8
carbon source D-Lactate (C) +0.4 +0.1 +0.2 -3.5 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 +0.0 +0.5 -3.5 +0.4
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM -0.3 +0.2 +0.3 -2.9 +0.3
carbon source D-Glucuronic Acid (C) -0.2 -0.1 -0.2 -2.7 +0.7
carbon source butyrate (C) +0.4 +0.1 +0.1 -2.5 -0.5
stress RCH2_defined_glucose_5mM with caffeic 1 mM -0.5 -1.5 +0.5 -0.3 -0.6
phage Burk1_10 +0.4 -0.0 +0.6 -2.5 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.4 +0.3 -2.5 +1.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 +0.3 +0.4 -2.4 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.4 -0.4 -1.0 +1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.2 +1.1 -1.5 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.2 +0.1 -2.4 +0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.7 -0.4 +0.7 -1.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 +0.3 +1.1 -1.2 -0.7
carbon source Laminarin 10 g/L (C) -0.4 -0.4 -0.6 +2.2 -0.7
stress R2A with Tricalcium phosphate 0.5 g/L -0.1 -0.1 +0.5 +1.8 -1.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.0 -0.2 +0.2 +2.0 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.2 +0.2 +2.0 +1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.0 +0.5 +2.6 +1.8
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