Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001661 and ABIE53_001662 are separated by 179 nucleotidesABIE53_001662 and ABIE53_001663 are separated by 51 nucleotidesABIE53_001663 and ABIE53_001664 are separated by 650 nucleotidesABIE53_001664 and ABIE53_001665 are separated by 72 nucleotides ABIE53_001661: ABIE53_001661 - bacterioferritin, at 1,847,680 to 1,848,159 _001661 ABIE53_001662: ABIE53_001662 - fumarate hydratase class I, at 1,848,339 to 1,849,862 _001662 ABIE53_001663: ABIE53_001663 - uncharacterized protein (TIGR00645 family), at 1,849,914 to 1,850,480 _001663 ABIE53_001664: ABIE53_001664 - acetyl-CoA synthetase, at 1,851,131 to 1,853,167 _001664 ABIE53_001665: ABIE53_001665 - putative solute:sodium symporter small subunit, at 1,853,240 to 1,853,803 _001665
Group Condition ABIE53_001661 ABIE53_001662 ABIE53_001663 ABIE53_001664 ABIE53_001665
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -2.2 -0.3 -4.5 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 -1.6 +0.3 -4.0 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.3 -0.2 -4.0 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -1.4 +0.1 -3.3 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.3 -0.2 -3.2 -1.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.9 -1.8 -0.1 -2.1 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.8 -0.0 -3.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.6 -1.5 -0.2 -2.6 -0.6
carbon source propionate (C) +0.3 +0.2 +0.6 -4.3 -2.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -1.8 +0.0 -2.2 +0.2
carbon source propionate (C) +0.6 +0.3 +0.7 -4.3 -2.3
carbon source acetate (C) +0.2 +0.0 +0.4 -4.2 -1.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.5 -1.5 +0.2 -2.2 -1.0
carbon source acetate (C) +0.3 +0.1 +0.2 -3.9 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 -0.8 -0.0 -2.8 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.9 -1.5 -0.4 -1.8 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.8 -0.8 +0.0 -1.9 -1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.5 -0.3 -2.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.4 -1.3 -0.4 -1.1 +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -1.3 +0.0 -2.4 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.6 -0.3 -2.7 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.7 -0.4 -1.9 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -1.9 -0.2 -1.4 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -1.8 -0.7 -1.1 -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -0.9 -0.1 -2.1 -0.9
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.2 -0.2 -3.4 +0.2
soil extract Indole-3-pyruvic 5 mM in soil extract +0.0 +1.1 +1.2 -2.4 +0.1
carbon source D-Lactate (C) -0.2 -0.6 -0.3 -0.6 +2.7
carbon source D-Lactate (C) -0.0 -0.4 -0.6 -0.6 +2.7
soil extract Indole-3-pyruvic 5 mM in soil extract +0.5 +1.1 +1.6 -1.8 -0.3
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ABIE53_001661
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ABIE53_001662
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ABIE53_001664
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ABIE53_001665
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