Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001651	ABIE53_001652	ABIE53_001653	ABIE53_001654	ABIE53_001655
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	+0.1	-0.1	+0.2	-0.1	-4.6
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.3	-1.1	+0.2	-0.1	-2.6
carbon source	Shikimic Acid 5 mM (C)	-0.3	-0.3	+0.3	-0.4	-2.2
stress	RCH2_defined_glucose_5mM with Shikimic Acid 5 mM	+0.1	+0.0	+0.2	+0.2	-3.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	-0.2	+0.3	+0.0	-2.4
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-0.3	+0.2	+0.1	+0.0	-2.3
stress	R2A with Tricalcium phosphate 0.5 g/L	-0.5	-0.1	+0.3	-0.4	-1.7
r2a outgrowth control	R2A outgrowth control	+0.7	-0.5	+0.4	+0.1	-2.8
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.2	-0.6	-0.4	+0.6	-1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	+0.1	+0.5	-0.2	-1.7
carbon source	Acetylated xylan 10 g/L (C)	-0.1	+0.2	+1.0	-1.4	-1.3
nitrogen source	histamine 2mM N source	-0.0	+0.3	+0.3	+0.2	-2.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.4	-1.6	+0.5	-0.5	+0.7
carbon source	Shikimic Acid (C)	+0.2	+0.6	+0.1	+0.1	-2.1
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM	+0.7	+0.2	-0.3	+0.2	-1.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.8	+0.7	-1.4	+1.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.1	+0.5	+0.8	-0.2	-1.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.2	+0.2	+1.1	-0.3	+1.9
stress	R2A with N-decanoyl-DL-Homoserine lactone 10 uM	+0.1	-0.6	+0.4	+0.2	+1.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.7	+0.5	+0.4	+0.2	+1.5
carbon source	Azelaic 20 mM (C)	+0.1	-0.7	+0.5	+0.1	+1.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.8	+0.7	+0.4	+0.3	+1.3
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	+0.7	+0.7	-0.8	+0.5	+0.9
carbon source	D-Fructose (C)	+0.7	-0.3	-0.2	+0.5	+1.8
carbon source	D-Mannose (C)	+0.9	-0.2	+0.2	+0.6	+1.1
carbon source	D-Glucose-6-Phosphate (C)	+1.1	+0.9	+0.3	+0.4	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+0.1	+1.2	+0.2	+1.8
carbon source	Tween 20 (C)	+0.6	+0.3	-0.0	+0.5	+1.8
carbon source	butyrate (C)	+0.8	+0.3	+0.3	+0.2	+1.6
stress	Growth in presence of limonene	+0.1	+0.3	-0.0	+0.0	+3.2