Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_003821	ABIE53_001630	ABIE53_001631	ABIE53_001632	ABIE53_001633
soil extract	D-Glucose 5 mM in soil extract	N.D.	-4.1	-0.1	-0.1	-0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-2.6	-0.6	-0.2	+0.1
soil extract	Indole-3-pyruvic 5 mM in soil extract	N.D.	-2.8	-0.4	-0.0	-0.0
stress	RCH2_defined_glucose_5mM with Sucrose 5 mM	N.D.	-3.0	+0.0	-0.0	+0.0
stress	R2A with Chloride 200 mM	N.D.	-2.3	-0.7	+0.1	+0.1
stress	RCH2_defined_glucose_5mM with Cinnamic 5 mM	N.D.	-2.6	+0.0	-0.1	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-3.1	+0.1	+0.1	+0.1
carbon source	L-Threonine (C)	N.D.	-2.0	-0.5	-0.0	-0.0
carbon source	L-Asparagine (C)	N.D.	-2.1	-0.3	-0.1	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-2.0	-0.4	+0.1	-0.1
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	N.D.	-2.5	+0.2	-0.1	-0.1
stress	RCH2_defined_glucose_5mM with Nerolidol 5 mM	N.D.	-2.0	-0.2	-0.0	-0.0
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 0.5 mM	N.D.	-1.9	-0.4	-0.0	+0.0
stress	RCH2_defined_glucose_5mM with Adenine 2 mM	N.D.	-2.1	+0.0	-0.1	-0.1
soil extract	Abietic Acid 5 mM in soil extract	N.D.	-2.3	-0.0	+0.1	+0.0
stress	R2A with N-(3-oxohexanoyl)-DL-homoserine lactone 10 uM	N.D.	-2.1	+0.2	-0.1	-0.1
carbon source	D-Trehalose (C)	N.D.	-1.3	-0.6	-0.0	-0.1
soil extract	Shikimic Acid 5 mM in soil extract	N.D.	-2.0	+0.0	-0.1	+0.0
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	N.D.	-1.5	-0.5	+0.1	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	-1.3	-0.6	-0.2	+0.2
stress	M9 with Isopropyl alcohol 21 g/L	N.D.	-2.0	+0.2	-0.0	-0.0
stress	R2A with 3-methyl-3-butenol 4.5 g/L	N.D.	-1.9	+0.1	+0.0	-0.0
stress	RCH2_defined_glucose_5mM with Lumichrome 5 mM	N.D.	-1.9	+0.2	+0.0	-0.0
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	N.D.	-1.7	+0.4	+0.0	+0.1
carbon source	Laminarin 10 g/L (C)	N.D.	+1.2	-1.0	-0.2	-0.0
carbon source	Laminarin 10 g/L (C)	N.D.	+1.4	-0.7	+0.0	-0.1
stress	R2A with Chloride 200 mM	N.D.	+1.6	-0.5	-0.1	+0.0
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.7	+0.1	-0.2	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	N.D.	+1.7	+0.4	-0.2	-0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	N.D.	+1.6	+0.4	-0.2	-0.1