Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001613 and ABIE53_001614 are separated by 158 nucleotidesABIE53_001614 and ABIE53_001615 are separated by 94 nucleotidesABIE53_001615 and ABIE53_001616 are separated by 20 nucleotidesABIE53_001616 and ABIE53_001617 are separated by 9 nucleotides ABIE53_001613: ABIE53_001613 - GST-like protein, at 1,794,351 to 1,795,052 _001613 ABIE53_001614: ABIE53_001614 - acyl-CoA dehydrogenase, at 1,795,211 to 1,796,470 _001614 ABIE53_001615: ABIE53_001615 - aminoglycoside phosphotransferase (APT) family kinase protein, at 1,796,565 to 1,797,671 _001615 ABIE53_001616: ABIE53_001616 - broad specificity phosphatase PhoE, at 1,797,692 to 1,798,408 _001616 ABIE53_001617: ABIE53_001617 - enoyl-CoA hydratase/carnithine racemase, at 1,798,418 to 1,799,206 _001617
Group Condition ABIE53_001613 ABIE53_001614 ABIE53_001615 ABIE53_001616 ABIE53_001617
carbon source L-Phenylalanine (C) +0.0 -0.3 -0.2 +0.1 -3.7
carbon source L-Phenylalanine (C) -0.1 -0.1 +0.0 +0.5 -3.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.4 -0.4 -0.3 -2.9 -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.7 -0.6 -0.4 -0.1 -1.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.1 -2.2 -0.4 +0.2 -0.8
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.2 -0.5 -0.2 -0.1 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 -0.9 +0.1 +0.3 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.7 -0.3 -0.5 -0.7
carbon source Inosine (C) -0.2 -0.1 -0.4 -0.8 -0.9
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.4 -0.1 -1.2 -0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.2 +0.3 -0.3 -1.7 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.1 -0.3 -1.3 -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.0 -0.3 +0.1 -1.6 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 -0.3 -0.1 -1.0 -0.7
carbon source D-Mannose (C) -0.5 -0.4 -0.2 -0.4 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.0 -0.1 -1.2 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 -0.5 +0.0 -1.2 -0.2
stress RCH2_defined_glucose_5mM with caffeic 1 mM +0.1 +0.1 -0.1 -1.4 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.3 +0.1 -0.8 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.1 -0.7 +0.2 -0.8 -0.1
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.4 -0.6 -0.2 -1.3 +0.2
carbon source D-Lactate (C) -0.2 -0.2 -0.2 -1.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.4 -0.0 +0.2 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 -0.4 +0.4 -1.5 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.0 -0.3 +0.0 +0.6 -0.9
carbon source D-Lactate (C) -0.1 +0.2 -0.1 +0.5 -0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.0 -0.1 -0.0 +1.0 -1.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -0.4 -0.1 +1.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -1.2 +0.3 +0.4 +0.6
stress RCH2_defined_glucose_5mM with Adenine 4 mM -0.1 -0.3 -0.3 +0.7 +0.3
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ABIE53_001613
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ABIE53_001614
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ABIE53_001616
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ABIE53_001617
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