Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001582	ABIE53_001583	ABIE53_001584	ABIE53_001585	ABIE53_001586
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	-0.3	-0.1	-0.3	N.D.	-2.5
stress	RCH2_defined_glucose_5mM with Adenine 5 mM	+0.1	-0.1	-0.1	N.D.	-2.9
stress	M9 with 3-methyl-2-butenol 2 g/L	-0.6	-0.3	-0.1	N.D.	-1.9
stress	M9 with 3-methyl-2-butenol 2 g/L	-0.6	-0.2	+0.1	N.D.	-2.1
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	+0.0	-0.1	-0.6	N.D.	-2.0
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	-0.2	+0.1	+0.0	N.D.	-2.3
stress	RCH2_defined_glucose_5mM with Adenine 4 mM	+0.3	-0.1	-0.2	N.D.	-2.4
soil extract	Adenine 5 mM in soil extract	+0.1	-0.1	-0.2	N.D.	-2.0
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.7	+0.0	-0.3	N.D.	-1.1
stress	M9 with 3-methyl-2-butenol 2 g/L	-0.6	+0.0	+0.0	N.D.	-1.3
carbon source	Azelaic 20 mM (C)	+0.1	-0.1	-0.3	N.D.	-1.5
carbon source	Azelaic 20 mM (C)	+0.3	-0.2	-0.3	N.D.	-1.6
stress	RCH2_defined_glucose_5mM with caffeic 1 mM	+0.1	-0.0	+0.0	N.D.	-1.9
carbon source	L-Phenylalanine (C)	+0.3	+0.0	-1.4	N.D.	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.7	-0.1	+0.0	N.D.	-1.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.5	+0.2	-0.3	N.D.	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.1	+0.4	N.D.	-1.5
stress	M9 with Chloride 200 mM	+0.7	+0.1	-0.2	N.D.	-1.0
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.9	-0.0	+0.1	N.D.	-1.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	+0.0	+0.4	N.D.	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.6	+0.1	+0.5	N.D.	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.0	-0.1	+0.2	N.D.	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.8	+0.1	+0.2	N.D.	-0.9
r2a outgrowth control	R2A outgrowth control	+0.9	+0.0	+0.4	N.D.	-0.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.3	+0.3	+0.2	N.D.	-0.4
phage	Burk1_10	+0.9	+0.1	+0.2	N.D.	+0.8
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.1	+0.5	N.D.	+1.0
phage	Burk1_100	+1.5	+0.2	+0.1	N.D.	+0.4
phage	Burk1_100	+1.6	+0.0	+0.1	N.D.	+0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.1	+0.1	+0.6	N.D.	+0.9