Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001580	ABIE53_001581	ABIE53_001582	ABIE53_001583	ABIE53_001584
carbon source	L-Phenylalanine (C)	-0.1	-0.1	+0.3	+0.0	-1.4
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.6	+0.2	-0.5	-0.2	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.2	+0.3	-0.7	+0.1	+0.3
carbon source	D-Lactate (C)	-0.2	+0.5	-0.7	+0.2	+0.0
carbon source	D-Sorbitol (C)	-0.2	+0.6	-0.5	+0.2	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.3	-0.5	+0.7	-0.1	+0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.4	-0.3	+0.5	+0.2	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.5	+0.3	+0.5	+0.1	+0.5
stress	M9 with Chloride 200 mM	-0.1	+0.5	+0.7	+0.1	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.3	-0.3	+0.8	+0.2	+0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.8	-0.4	-0.0	+0.4
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	-0.1	+0.8	+0.6	+0.1	-0.2
carbon source	Acetylated xylan 10 g/L (C)	-0.5	+0.8	+0.8	-0.2	+0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-0.3	+1.1	+0.1	+0.6
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.4	+0.3	+0.6	+0.2	-0.1
phage	Burk2_1	-0.1	+0.7	+0.9	+0.2	-0.0
r2a outgrowth control	R2A outgrowth control	+0.1	+0.2	+0.9	+0.0	+0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.0	+0.6	+0.3	+0.6
phage	Burk2_1	+0.1	+0.6	+0.7	+0.1	+0.2
phage	Burk2_10	+0.0	+0.5	+1.1	+0.1	-0.0
phage	Burk2_10	+0.1	+0.7	+0.8	+0.0	+0.1
phage	Burk1_1	+0.1	+0.4	+1.0	+0.2	+0.1
carbon source	Acetylated xylan 10 g/L (C)	-0.0	+0.9	+0.9	-0.0	+0.1
phage	Burk1_10	-0.2	+0.8	+1.1	+0.1	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	+0.4	+1.3	+0.0	+0.1
phage	Burk1_10	-0.0	+1.0	+0.9	+0.1	+0.2
nitrogen source	Xanthine 5 mM (N)	-0.0	+0.9	+1.0	+0.2	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+0.2	+1.3	+0.3	+0.2
phage	Burk1_100	-0.1	+1.1	+1.6	+0.0	+0.1
phage	Burk1_100	+0.1	+1.2	+1.5	+0.2	+0.1