Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001569	ABIE53_001570	ABIE53_001571	ABIE53_001572	ABIE53_001573
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.7	-3.7	-3.9	-3.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.9	-3.0	-5.1	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	-0.7	-2.7	-3.7	-2.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.0	-0.8	-2.9	-3.6	-1.6
stress	M9 with Ethanol 2.5 vol%	-0.1	-0.1	-2.6	-6.0	+0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	-0.5	-4.4	-3.5	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.3	-0.5	-3.1	-4.1	-0.9
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	-0.8	-3.7	-3.5	-0.2
stress	R2A with Isopropyl alcohol 21 g/L	-0.1	+0.1	-2.9	-5.4	+0.1
stress	R2A with 3-methyl-3-butenol 4.5 g/L	-0.0	+0.1	-3.4	-4.6	-0.1
stress	R2A with 3-methyl-3-butenol 4.5 g/L	-0.0	-0.1	-3.5	-4.2	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.3	-0.2	-2.5	-3.3	-1.6
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.3	-3.1	-5.0	-0.3
carbon source	D-Alanine (C)	-0.1	-0.5	-2.6	-4.2	-0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.1	-2.7	-2.6	-2.4
stress	R2A with Isopropyl alcohol 21 g/L	-0.0	-0.1	-2.5	-4.8	+0.2
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	-0.0	-0.5	-3.4	-2.9	-0.4
stress	R2A with Propan-1-ol 13 g/L	+0.1	+0.0	-3.3	-4.2	+0.3
stress	RCH2_defined_glucose_5mM with Pyridoxal 1 mM	-0.0	-0.1	-3.4	-3.2	-0.2
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.2	-2.4	-5.1	+0.1
stress	R2A with Propan-1-ol 13 g/L	-0.1	-0.1	-3.5	-3.5	+0.1
stress	R2A with Isopropyl alcohol 21 g/L	-0.1	+0.0	-2.9	-4.3	+0.3
stress	M9 with 3-methyl-3-butenol 4.5 g/L	-0.1	-0.1	-2.9	-4.0	+0.1
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	-0.1	-0.1	-2.8	-3.3	-0.6
stress	M9 with Ethanol 2.5 vol%	-0.0	-0.0	-2.9	-4.1	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.2	-0.7	-2.5	-3.0	-0.8
carbon source	D-Lactate (C)	+0.1	-1.9	-1.6	-2.6	-0.7
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	+0.2	-0.4	-2.7	-3.0	-0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	-0.3	-3.1	-3.1	+0.0
stress	R2A with Propan-1-ol 13 g/L	-0.1	-0.2	-2.9	-3.2	+0.2