Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001560 and ABIE53_001561 are separated by 23 nucleotidesABIE53_001561 and ABIE53_001562 overlap by 8 nucleotidesABIE53_001562 and ABIE53_001563 are separated by 32 nucleotidesABIE53_001563 and ABIE53_001564 are separated by 457 nucleotides ABIE53_001560: ABIE53_001560 - putative ABC transport system permease protein, at 1,737,682 to 1,740,264 _001560 ABIE53_001561: ABIE53_001561 - hemoglobin, at 1,740,288 to 1,740,701 _001561 ABIE53_001562: ABIE53_001562 - uncharacterized protein (DUF924 family), at 1,740,694 to 1,741,374 _001562 ABIE53_001563: ABIE53_001563 - 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase, at 1,741,407 to 1,743,602 _001563 ABIE53_001564: ABIE53_001564 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 1,744,060 to 1,744,806 _001564
Group Condition ABIE53_001560 ABIE53_001561 ABIE53_001562 ABIE53_001563 ABIE53_001564
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.4 -0.1 -0.3 +0.2 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.7 -0.4 -0.3 -0.0 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 +0.2 +0.1 +0.1 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.0 -0.8 -0.6 -0.5 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -0.2 -0.1 -0.2 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.0 -0.6 -0.6 +0.2 -0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 +0.4 -0.9 +0.1 +0.5
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.2 -0.7 -1.0 +0.2 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.9 +0.2 +0.1 -0.7
r2a outgrowth control R2A outgrowth control +0.1 -1.0 -0.9 +0.1 +0.0
carbon source L-Tryptophan (C) -0.0 -0.4 -1.2 -0.3 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.1 -1.0 +0.4 +0.1 +0.3
carbon source Acetylated xylan 10 g/L (C) -0.2 -0.6 -0.7 +0.5 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.2 +0.3 -0.1 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.2 -0.5 +0.7 -0.3 -0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.4 +1.0 +0.2 -0.4 -0.2
carbon source D-Gluconic Acid (C) -0.4 +0.2 -1.0 +0.0 +0.5
carbon source L-Proline (C) -0.3 -0.5 -0.6 +0.0 +0.8
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.1 -0.3 -0.7 +0.1 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 -0.2 +0.4 +0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -1.0 -0.1 +0.2 +0.6
carbon source D-Galactose (C) -0.2 +0.3 -0.8 -0.0 +0.8
carbon source D-Glucose (C) -0.3 +0.5 -0.5 -0.0 +0.9
carbon source D-Fructose (C) -0.8 +0.2 +0.3 +0.0 +0.9
carbon source L-Proline (C) -0.1 +0.6 -0.9 +0.3 +0.7
carbon source D-Glucuronic Acid (C) +0.0 +0.5 -0.6 +0.1 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 +0.6 +0.9 +0.2 -0.2
carbon source D-Glucuronic Acid (C) +0.1 +0.6 -0.7 +0.2 +0.8
carbon source Tween 20 (C) -0.2 +1.1 -0.5 +0.0 +1.1
carbon source Tween 20 (C) -0.4 +1.2 -0.5 +0.3 +1.1
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