Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001554	ABIE53_001555	ABIE53_001556	ABIE53_001557	ABIE53_001558
stress	R2A with Chloride 200 mM	-4.2	-1.0	-0.2	-0.2	+0.2
stress	R2A with Chloride 200 mM	-2.5	-1.3	+0.0	-0.2	-1.0
stress	Growth in presence of pinene	-2.7	-0.2	-0.2	+0.1	-1.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+1.2	-0.1	-0.1	+0.1	-5.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-3.3	-0.0	-0.1	+0.7	-1.0
plant outgrowth control	Plant outgrowth control	-2.2	+0.3	+0.2	+0.1	-1.9
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	-3.5	+0.5	-0.1	+0.1	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.4	-0.5	+0.0	+0.0	-1.0
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.2	+0.3	-0.4	+0.4	-1.6
plant outgrowth control	Plant outgrowth control	-2.2	+0.2	+0.0	-0.0	-0.4
stress	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM	-1.4	+0.2	-0.5	-0.3	-0.3
mixed community	Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia	-2.2	+0.5	-0.2	+0.0	-0.4
carbon source	Pectin 10 g/L (C)	-1.3	+0.6	-0.3	-0.2	-0.9
nitrogen source	Ammonium chloride 0.5 mM (N)	-1.2	+0.3	-0.3	-0.1	-0.7
carbon source	Pectin 10 g/L (C)	-1.7	+0.5	-0.3	-0.2	-0.2
stress	R2A with N-decanoyl-DL-Homoserine lactone 10 uM	-1.6	+0.4	-0.2	-0.0	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.7	-0.6	-0.2	+0.0	+0.7
stress	R2A with Clay 500 g/L	-0.5	+0.5	-0.1	-0.1	-1.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	+0.3	-0.6	+0.3	-0.7
stress	R2A with Clay 500 g/L	-1.8	+0.6	-0.2	-0.1	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	+0.1	+0.6	-0.1	+0.4	-2.5
stress	R2A with Quartz_sand 500 g/L	-1.6	+0.7	-0.2	-0.0	-0.1
stress	RCH2_defined_glucose_5mM with Chlorogenic 1 mM	-1.8	+0.3	-0.3	-0.0	+0.7
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.5	-0.1	-0.3	+0.2	+0.6
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.6	+0.2	+0.2	+0.5	-1.4
in planta	Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.3	+0.5	+0.4	-1.5
soil extract	Shikimic Acid 5 mM in soil extract	+1.5	-0.2	-0.3	-0.3	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.4	-0.5	-0.1	+0.3	+2.7
carbon source	Shikimic Acid 5 mM (C)	+1.7	+0.4	+0.2	+0.2	-0.4
carbon source	Acetylated xylan 10 g/L (C)	+1.4	+0.6	+0.2	+0.3	+0.8