Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001531 and ABIE53_001532 are separated by 117 nucleotidesABIE53_001532 and ABIE53_001533 are separated by 203 nucleotidesABIE53_001533 and ABIE53_001534 are separated by 499 nucleotidesABIE53_001534 and ABIE53_001535 are separated by 140 nucleotides ABIE53_001531: ABIE53_001531 - hypothetical protein, at 1,710,297 to 1,710,407 _001531 ABIE53_001532: ABIE53_001532 - hypothetical protein, at 1,710,525 to 1,710,842 _001532 ABIE53_001533: ABIE53_001533 - DNA-binding transcriptional LysR family regulator, at 1,711,046 to 1,711,960 _001533 ABIE53_001534: ABIE53_001534 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 1,712,460 to 1,712,816 _001534 ABIE53_001535: ABIE53_001535 - ACS family hexuronate transporter-like MFS transporter, at 1,712,957 to 1,714,246 _001535
Group Condition ABIE53_001531 ABIE53_001532 ABIE53_001533 ABIE53_001534 ABIE53_001535
plant outgrowth control Plant outgrowth control N.D. -0.9 -0.4 N.D. -0.2
r2a outgrowth control R2A outgrowth control N.D. -0.6 -0.9 N.D. -0.1
carbon source Shikimic Acid 5 mM (C) N.D. -0.3 -1.1 N.D. +0.1
carbon source Acetylated xylan 10 g/L (C) N.D. -0.1 -1.1 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 -0.7 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 -1.1 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 -0.8 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 -0.5 N.D. -0.1
r2a outgrowth control R2A outgrowth control N.D. -0.3 -0.6 N.D. -0.1
carbon source Laminarin 10 g/L (C) N.D. -0.0 -1.0 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.3 -1.0 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.3 -1.1 N.D. -0.0
carbon source Xylitol (C) N.D. +0.1 -0.9 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.0 +0.1 N.D. -0.0
stress RCH2_defined_glucose_5mM with Sucrose 5 mM N.D. +0.2 -1.0 N.D. +0.1
r2a outgrowth control R2A outgrowth control N.D. -0.7 +0.2 N.D. -0.4
stress RCH2_defined_glucose_5mM with caffeic 1 mM N.D. +0.4 -0.8 N.D. -0.2
plant outgrowth control Plant outgrowth control N.D. -0.6 +0.3 N.D. -0.2
carbon source D-Gluconic Acid (C) N.D. +0.4 -0.8 N.D. -0.1
carbon source D-Fructose (C) N.D. +0.5 -1.0 N.D. -0.0
r2a outgrowth control R2A outgrowth control N.D. -0.4 +0.4 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.6 +0.5 N.D. -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.2 -0.7 N.D. +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.6 +0.5 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.6 +0.7 N.D. -0.1
carbon source Tween 20 (C) N.D. +0.3 -0.5 N.D. +0.3
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut N.D. +0.1 +0.7 N.D. -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.4 +1.0 N.D. -0.0
carbon source D-Glucuronic Acid (C) N.D. -0.1 -0.1 N.D. +1.4
carbon source D-Glucuronic Acid (C) N.D. +0.2 -0.3 N.D. +1.5
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