Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001333 and ABIE53_001334 are separated by 1 nucleotidesABIE53_001334 and ABIE53_001335 are separated by 88 nucleotidesABIE53_001335 and ABIE53_001336 are separated by 179 nucleotidesABIE53_001336 and ABIE53_001337 overlap by 19 nucleotides ABIE53_001333: ABIE53_001333 - DNA-binding transcriptional LysR family regulator, at 1,490,810 to 1,491,748 _001333 ABIE53_001334: ABIE53_001334 - hypothetical protein, at 1,491,750 to 1,492,511 _001334 ABIE53_001335: ABIE53_001335 - glutathione S-transferase, at 1,492,600 to 1,493,211 _001335 ABIE53_001336: ABIE53_001336 - LysR family glycine cleavage system transcriptional activator, at 1,493,391 to 1,494,365 _001336 ABIE53_001337: ABIE53_001337 - hypothetical protein, at 1,494,347 to 1,495,072 _001337
Group Condition ABIE53_001333 ABIE53_001334 ABIE53_001335 ABIE53_001336 ABIE53_001337
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -1.2 -0.1 -1.6 -0.5
carbon source Shikimic Acid 5 mM (C) -0.0 -0.5 -0.2 -0.8 -1.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 -0.5 -0.6 -0.6 -0.5
stress R2A with Tricalcium phosphate 0.5 g/L -0.1 -0.2 -0.1 -0.7 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 -0.4 -1.0 -1.0 -0.4
carbon source Shikimic Acid 5 mM (C) -0.0 -0.3 -0.4 -0.2 -1.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.8 -0.1 -0.7 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.2 -0.3 -0.7 -0.6
plant outgrowth control Plant outgrowth control +0.2 +0.1 -0.3 -1.0 -1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.1 -0.5 -1.1 -0.5
carbon source Laminarin 10 g/L (C) +0.1 -0.4 -0.4 -0.7 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 +0.5 -0.6 -1.3 -0.5
carbon source Laminarin 10 g/L (C) +0.3 -0.2 -0.4 -0.8 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 -0.4 -0.6 -0.5 -0.7
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -0.3 +0.3 -0.0 -1.4 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.1 -0.2 -1.0 -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 -0.5 +0.3 -1.1 +0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.2 +0.5 -0.3 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 +0.3 -0.1 -0.8 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.3 +0.2 -1.0 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.4 -0.5 -0.5 +0.6 -0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.5 +0.6 +0.4 -0.4 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.6 +0.2 -0.6 +0.3 +0.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.4 +0.6 +0.5 +0.6 +0.0
m9 no stress control M9 no stress control -0.1 +0.4 -0.1 +0.8 +0.8
stress M9 with 3-methyl-2-butenol 2 g/L +0.0 +0.5 +0.2 +0.5 +0.9
stress M9 with 3-methyl-2-butenol 2 g/L -0.1 +0.3 +0.0 +1.0 +1.1
stress M9 with 3-methyl-2-butenol 2 g/L +0.2 +0.5 -0.0 +1.0 +0.7
m9 no stress control M9 no stress control +0.0 +0.4 +0.5 +0.6 +0.9
stress M9 with 3-methyl-2-butenol 2 g/L +0.3 +0.7 +0.2 +0.9 +0.9
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ABIE53_001333
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ABIE53_001334
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ABIE53_001336
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ABIE53_001337
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