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Cofit
Protein
Homologs
Fitness for 5 genes in
Paraburkholderia graminis OAS925
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE53_001255 and ABIE53_001256 are separated by 159 nucleotides
ABIE53_001256 and ABIE53_001257 are separated by 146 nucleotides
ABIE53_001257 and ABIE53_001258 are separated by 249 nucleotides
ABIE53_001258 and ABIE53_001259 are separated by 60 nucleotides
ABIE53_001255: ABIE53_001255 - adenosylcobyric acid synthase, at 1,399,678 to 1,401,222
_001255
ABIE53_001256: ABIE53_001256 - putative oxidoreductase, at 1,401,382 to 1,401,798
_001256
ABIE53_001257: ABIE53_001257 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 1,401,945 to 1,402,364
_001257
ABIE53_001258: ABIE53_001258 - chromosome partitioning protein, at 1,402,614 to 1,403,252
_001258
ABIE53_001259: ABIE53_001259 - aspartate 1-decarboxylase, at 1,403,313 to 1,403,699
_001259
Group
Condition
ABIE53
_001255
ABIE53
_001256
ABIE53
_001257
ABIE53
_001258
ABIE53
_001259
stress
M9 with Chloride 200 mM
-2.1
-0.2
-3.4
-0.2
N.D.
stress
M9 with PEG 6000 16 vol%
-4.2
+0.0
-1.8
+0.2
N.D.
m9 no stress control
M9 no stress control
-4.1
-0.1
-1.4
+0.0
N.D.
stress
M9 with Isopropyl alcohol 21 g/L
-4.1
-0.0
-0.7
-0.3
N.D.
stress
M9 with 3-methyl-3-butenol 4.5 g/L
-4.5
+0.3
-0.7
-0.1
N.D.
m9 no stress control
M9 no stress control
-3.8
-0.0
-1.0
-0.0
N.D.
stress
M9 with Isopropyl alcohol 21 g/L
-4.3
+0.2
-0.8
+0.2
N.D.
stress
M9 with 3-methyl-3-butenol 4.5 g/L
-4.6
-0.1
-0.0
+0.0
N.D.
stress
M9 with 3-methyl-2-butenol 2 g/L
-3.7
-0.1
-0.7
-0.0
N.D.
stress
M9 with 3-methyl-2-butenol 2 g/L
-3.6
+0.0
-1.0
+0.1
N.D.
stress
M9 with 3-methyl-3-butenol 4.5 g/L
-4.2
+0.2
-0.2
-0.3
N.D.
stress
M9 with Isopropyl alcohol 21 g/L
-4.1
-0.2
-0.2
+0.2
N.D.
stress
M9 with Isopropyl alcohol 21 g/L
-4.0
-0.1
-0.3
+0.3
N.D.
stress
M9 with Propan-1-ol 13 g/L
-3.6
+0.0
-0.5
-0.0
N.D.
stress
M9 with 3-methyl-2-butenol 2 g/L
-3.3
+0.2
-1.1
+0.2
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
-0.0
-0.2
-3.3
-0.4
N.D.
m9 no stress control
M9 no stress control
-3.9
+0.2
-0.5
+0.2
N.D.
stress
M9 with PEG 6000 16 vol%
-4.3
+0.1
-0.2
+0.4
N.D.
stress
M9 with PEG 6000 16 vol%
-4.4
-0.1
+0.4
+0.2
N.D.
stress
M9 with PEG 6000 16 vol%
-4.4
-0.0
+0.6
+0.1
N.D.
stress
M9 with Propan-1-ol 13 g/L
-3.2
+0.1
-0.7
+0.1
N.D.
stress
M9 with 3-methyl-2-butenol 2 g/L
-3.9
-0.1
+0.1
+0.2
N.D.
m9 no stress control
M9 no stress control
-3.9
-0.2
+0.6
-0.1
N.D.
in planta
Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days
-1.1
-0.0
-2.2
-0.2
N.D.
carbon source
D-Lactate (C)
-0.4
-1.0
-0.7
-1.5
N.D.
carbon source
Inosine (C)
+0.3
-0.1
-3.7
-0.1
N.D.
stress
M9 with Ethanol 2.5 vol%
-2.8
-0.1
-0.8
+0.3
N.D.
carbon source
butyrate (C)
+0.4
+0.0
-3.5
-0.2
N.D.
stress
M9 with Propan-1-ol 13 g/L
-3.2
-0.3
+0.3
+0.4
N.D.
stress
M9 with Chloride 200 mM
-2.2
+0.2
+0.6
-1.0
N.D.
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