Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001233 and ABIE53_001234 are separated by 3 nucleotidesABIE53_001234 and ABIE53_001235 are separated by 450 nucleotidesABIE53_001235 and ABIE53_001236 are separated by 79 nucleotidesABIE53_001236 and ABIE53_001237 are separated by 102 nucleotides ABIE53_001233: ABIE53_001233 - lipopolysaccharide export system permease protein, at 1,376,537 to 1,377,685 _001233 ABIE53_001234: ABIE53_001234 - lipopolysaccharide export system permease protein, at 1,377,689 to 1,378,477 _001234 ABIE53_001235: ABIE53_001235 - leucyl aminopeptidase, at 1,378,928 to 1,380,469 _001235 ABIE53_001236: ABIE53_001236 - DNA polymerase-3 subunit chi, at 1,380,549 to 1,380,965 _001236 ABIE53_001237: ABIE53_001237 - outer membrane biosynthesis protein TonB, at 1,381,068 to 1,381,973 _001237
Group Condition ABIE53_001233 ABIE53_001234 ABIE53_001235 ABIE53_001236 ABIE53_001237
carbon source Acetylated xylan 10 g/L (C) N.D. N.D. -2.2 N.D. -0.0
carbon source Acetylated xylan 10 g/L (C) N.D. N.D. -1.2 N.D. -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -1.4 N.D. +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. -0.7 N.D. +0.4
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.7 N.D. -0.4
carbon source m-Inositol (C) N.D. N.D. +0.8 N.D. -0.4
carbon source D-Lactate (C) N.D. N.D. +0.9 N.D. -0.3
carbon source L-Proline (C) N.D. N.D. +1.0 N.D. -0.1
carbon source D-Fructose (C) N.D. N.D. +1.2 N.D. -0.3
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. +1.1 N.D. -0.2
carbon source Xylitol (C) N.D. N.D. +1.0 N.D. -0.0
carbon source D-Sorbitol (C) N.D. N.D. +1.2 N.D. -0.2
stress control RCH2_defined_glucose_5mM with no stress N.D. N.D. +0.9 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.9 N.D. +0.1
stress RCH2_defined_glucose_5mM with Adenine 5 mM N.D. N.D. +0.7 N.D. +0.3
stress RCH2_defined_glucose_5mM with Adenine 2 mM N.D. N.D. +1.1 N.D. +0.0
carbon source Tween 20 (C) N.D. N.D. +1.2 N.D. -0.0
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. N.D. +1.1 N.D. +0.1
soil extract Adenine 5 mM in soil extract N.D. N.D. +1.0 N.D. +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +1.1 N.D. +0.2
carbon source D-Gluconic Acid (C) N.D. N.D. +1.1 N.D. +0.1
carbon source L-Rhamnose (C) N.D. N.D. +1.3 N.D. -0.0
carbon source L-Histidine (C) N.D. N.D. +1.2 N.D. +0.0
carbon source D-Mannose (C) N.D. N.D. +1.1 N.D. +0.2
carbon source D-Fructose (C) N.D. N.D. +1.1 N.D. +0.2
carbon source D-Lactate (C) N.D. N.D. +1.0 N.D. +0.3
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. N.D. +0.8 N.D. +0.5
carbon source Tween 20 (C) N.D. N.D. +1.4 N.D. -0.1
stress RCH2_defined_glucose_5mM with Adenine 4 mM N.D. N.D. +1.1 N.D. +0.2
stress RCH2_defined_glucose_5mM with Adenine 2 mM N.D. N.D. +1.1 N.D. +0.3
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ABIE53_001233
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ABIE53_001234
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