Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001216 and ABIE53_001217 are separated by 291 nucleotidesABIE53_001217 and ABIE53_001218 are separated by 3 nucleotidesABIE53_001218 and ABIE53_001219 overlap by 20 nucleotidesABIE53_001219 and ABIE53_001220 are separated by 75 nucleotides ABIE53_001216: ABIE53_001216 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 1,359,173 to 1,359,826 _001216 ABIE53_001217: ABIE53_001217 - LacI family repressor for deo operon, udp, cdd, tsx, nupC, and nupG, at 1,360,118 to 1,361,209 _001217 ABIE53_001218: ABIE53_001218 - ribose transport system ATP-binding protein, at 1,361,213 to 1,362,700 _001218 ABIE53_001219: ABIE53_001219 - ribose transport system permease protein, at 1,362,681 to 1,363,694 _001219 ABIE53_001220: ABIE53_001220 - ribose transport system substrate-binding protein, at 1,363,770 to 1,364,732 _001220
Group Condition ABIE53_001216 ABIE53_001217 ABIE53_001218 ABIE53_001219 ABIE53_001220
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -4.0 -0.4 +0.0 -0.2 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.1 -0.7 -0.3 -1.2 +0.1
stress R2A with 3-methyl-3-butenol 4.5 g/L -3.6 +0.1 -0.1 -0.2 -0.3
stress R2A with 3-methyl-3-butenol 4.5 g/L -3.6 -0.1 -0.1 +0.2 -0.1
stress R2A with 3-methyl-3-butenol 4.5 g/L -3.5 -0.2 -0.1 +0.2 -0.0
stress R2A with 3-methyl-3-butenol 4.5 g/L -3.8 -0.2 -0.2 +0.3 +0.3
stress R2A with Isopropyl alcohol 21 g/L -3.4 +0.2 -0.0 +0.3 -0.3
stress M9 with 3-methyl-3-butenol 4.5 g/L -3.2 +0.1 -0.2 +0.4 +0.1
stress R2A with Isopropyl alcohol 21 g/L -3.1 -0.1 -0.0 +0.7 -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.5 -0.3 +0.6 -1.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 +0.1 +0.1 +1.0 -0.4
stress R2A with Isopropyl alcohol 21 g/L -2.9 -0.1 -0.0 +0.1 +0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.2 -0.6 -0.5 +0.7 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.7 -0.3 -0.6 +0.6 -0.0
stress R2A with Isopropyl alcohol 21 g/L -1.9 +0.1 -0.2 +0.4 -0.3
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.2 -0.4 +0.2 +0.5 -0.1
carbon source Citric Acid 20 mM (C) -1.6 +0.1 -0.3 -0.6 +0.6
stress R2A with Propan-1-ol 13 g/L -2.3 +0.1 +0.2 +0.1 +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -0.8 -0.2 -0.8 -0.5 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.1 -0.4 +0.6 -0.3
stress M9 with Ethanol 2.5 vol% -2.2 +0.0 +0.1 +0.5 +0.1
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -2.3 +0.2 +0.2 +0.3 +0.2
stress M9 with Chloride 200 mM -1.8 +0.3 +0.2 -0.3 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.4 +0.5 -1.0 -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -0.3 +0.2 +0.6 +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 +0.3 -0.5 +0.8 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 +0.1 +0.0 +1.0 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 +0.5 -0.4 +1.4 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 +0.3 +0.1 +1.8 -0.0
plant outgrowth control Plant outgrowth control +1.7 +0.3 +0.5 +0.2 -0.4
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