Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001129 and ABIE53_001130 overlap by 14 nucleotidesABIE53_001130 and ABIE53_001131 are separated by 74 nucleotidesABIE53_001131 and ABIE53_001132 are separated by 102 nucleotidesABIE53_001132 and ABIE53_001133 are separated by 14 nucleotides ABIE53_001129: ABIE53_001129 - putative Holliday junction resolvase, at 1,252,250 to 1,252,690 _001129 ABIE53_001130: ABIE53_001130 - pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 1,252,677 to 1,253,216 _001130 ABIE53_001131: ABIE53_001131 - aspartate carbamoyltransferase catalytic subunit, at 1,253,291 to 1,254,316 _001131 ABIE53_001132: ABIE53_001132 - putative transposase, at 1,254,419 to 1,255,705 _001132 ABIE53_001133: ABIE53_001133 - dihydroorotase, at 1,255,720 to 1,256,997 _001133
Group Condition ABIE53_001129 ABIE53_001130 ABIE53_001131 ABIE53_001132 ABIE53_001133
motility_chemotaxis Motility_chemotaxis, R2A; outer cut N.D. -0.3 -0.3 +0.1 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.8 -0.3 +0.0 +0.1
soil extract Indole-3-pyruvic 5 mM in soil extract N.D. -0.1 -0.3 -0.2 -0.3
stress M9 with 3-methyl-2-butenol 2 g/L N.D. -0.3 -0.4 +0.1 -0.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.5 -0.2 +0.1 -0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.2 -0.1 +0.2 -0.6
nitrogen source histamine 2mM N source N.D. -0.2 +0.1 +0.0 -0.5
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.2 -0.3 +0.2 -0.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.1 -0.1 +0.3 -0.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.1 +0.1 +0.3 -0.8
stress Growth in presence of pinene N.D. -0.6 -0.1 +0.3 +0.4
carbon source L-Proline (C) N.D. +0.2 +0.4 -0.1 -0.3
carbon source Adenosine (C) N.D. +0.4 -0.3 -0.1 +0.2
carbon source Acetylated xylan 10 g/L (C) N.D. +0.5 -0.3 -0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.3 +0.5 +0.3 -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.5 -0.2 -0.1 +0.3
carbon source D-Sorbitol (C) N.D. +0.6 +0.3 -0.1 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 +0.1 +0.1 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 +0.3 -0.2 +0.4
carbon source Shikimic Acid 5 mM (C) N.D. +0.2 +0.2 -0.1 +0.3
stress RCH2_defined_glucose_5mM with Abietic Acid 5 mM N.D. +0.4 -0.0 -0.1 +0.5
stress RCH2_defined_glucose_5mM with Pyridoxal 1 mM N.D. -0.2 +0.3 +0.2 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 +0.8 +0.2 -0.2
carbon source Acetylated xylan 10 g/L (C) N.D. +0.5 -0.1 +0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 +0.5 +0.1 +0.2
plant outgrowth control Plant outgrowth control N.D. +0.4 +0.2 -0.1 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.7 +0.2 +0.3 -0.1
plant outgrowth control Plant outgrowth control N.D. +0.7 -0.3 +0.0 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.2 +0.3 +0.2 +0.5
plant outgrowth control Plant outgrowth control N.D. +0.6 +0.3 +0.0 +0.3
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