Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001080 and ABIE53_001081 are separated by 7 nucleotidesABIE53_001081 and ABIE53_001082 are separated by 183 nucleotidesABIE53_001082 and ABIE53_001083 are separated by 270 nucleotidesABIE53_001083 and ABIE53_001084 overlap by 1 nucleotides ABIE53_001080: ABIE53_001080 - two-component system sensor histidine kinase PhcS, at 1,200,347 to 1,201,684 _001080 ABIE53_001081: ABIE53_001081 - two-component system response regulator PhcR, at 1,201,692 to 1,202,096 _001081 ABIE53_001082: ABIE53_001082 - two-component system probable response regulator PhcQ, at 1,202,280 to 1,203,314 _001082 ABIE53_001083: ABIE53_001083 - Na+/H+-dicarboxylate symporter, at 1,203,585 to 1,203,956 _001083 ABIE53_001084: ABIE53_001084 - Na+/H+-dicarboxylate symporter, at 1,203,956 to 1,204,459 _001084
Group Condition ABIE53_001080 ABIE53_001081 ABIE53_001082 ABIE53_001083 ABIE53_001084
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.7 -0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.4 -0.7 +0.1 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.2 -0.8 -0.3 N.D. N.D.
stress R2A with 3-methyl-3-butenol 4.5 g/L -0.4 -0.6 +0.1 N.D. N.D.
stress R2A with 3-methyl-3-butenol 4.5 g/L -0.3 -0.5 +0.1 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.3 -1.1 N.D. N.D.
phage Burk1_100 -0.5 -0.6 +0.6 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +0.0 -0.7 +0.3 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.1 +0.3 -0.7 N.D. N.D.
phage Burk1_100 -0.6 -0.1 +0.6 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.3 -0.6 +0.3 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 +0.5 -0.6 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.3 +0.4 -0.7 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +1.0 -1.3 N.D. N.D.
carbon source D-Gluconic Acid (C) -0.2 +0.6 -0.4 N.D. N.D.
carbon source m-Inositol (C) -0.2 +0.6 -0.3 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) +0.0 +0.5 -0.4 N.D. N.D.
carbon source D-Glucose (C) +0.2 +0.5 -0.4 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.5 +0.3 +0.6 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.3 +0.1 +0.6 N.D. N.D.
carbon source Pectin 10 g/L (C) +0.6 +0.4 -0.6 N.D. N.D.
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.6 -0.4 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.5 +0.7 -0.6 N.D. N.D.
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.2 +0.7 -0.3 N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM +1.3 +1.0 -0.3 N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 5 mM +1.0 +1.4 -0.3 N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 2 mM +1.3 +1.4 -0.4 N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +1.3 +1.3 -0.3 N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 2 mM +1.4 +1.3 -0.2 N.D. N.D.
stress RCH2_defined_glucose_5mM with Adenine 4 mM +1.7 +1.6 -0.3 N.D. N.D.
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