Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001053	ABIE53_001054	ABIE53_001055	ABIE53_001056	ABIE53_001057
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.0	-0.3	-1.1	-1.0	+0.1
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.7	-0.4	-0.1	-1.1	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	-0.2	-1.0	-1.2	-0.2
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.4	-0.5	-0.5	-0.9	-0.3
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.1	+0.2	-0.6	-0.4	-0.5
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.7	-0.0	-0.4	-0.6	-0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.3	-0.6	-0.6	+0.1
carbon source	D-Glucose (C)	+0.3	-0.3	-1.2	-0.3	-0.5
carbon source	L-Proline (C)	+0.6	-0.2	-0.9	-0.4	-0.5
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-0.3	+0.6	+0.4	-2.1	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	-0.3	-1.5	+0.3	+0.4
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.5	-0.2	-1.3	+0.8	-0.7
mixed community	Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia	+0.5	+0.1	-0.9	+0.3	-0.7
stress	R2A with p-Coumaric 0.5 mM	+0.5	-0.1	-1.1	+1.1	-0.3
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	+0.9	-0.1	-1.1	+0.9	-0.5
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	+0.5	-0.3	-0.6	+0.8	-0.2
stress	R2A with N-decanoyl-DL-Homoserine lactone 10 uM	+0.6	-0.0	-0.9	+0.9	-0.2
mixed community	Mixed culture; Alteromonas stellipolaris PQQ42 1:1 starting OD to Burkholderia	+0.7	-0.1	-0.6	+0.7	-0.3
stress	R2A with (5z)-4-bromo-5-(bromomethylene)-2(5h)-furanone 10 uM	+0.6	+0.0	-0.9	+1.0	-0.2
r2a no shaking	R2A no shaking	+0.3	-0.2	-0.5	+1.3	-0.2
nitrogen source	Xanthine 5 mM (N)	+0.5	+0.0	-1.1	+1.0	+0.3
stress	R2A with p-Coumaric 0.5 mM	+0.8	-0.0	-0.6	+0.8	-0.2
r2a shaking control	R2A shaking control	+0.7	+0.0	-0.3	+0.9	-0.5
carbon source	Acetylated xylan 10 g/L (C)	+0.6	-0.3	+0.5	+0.5	-0.4
carbon source	Pectin 10 g/L (C)	+0.8	-0.1	-0.5	+0.9	-0.2
stress	R2A with Abscisic 10 uM	+1.1	-0.1	-0.5	+1.2	-0.7
stress	R2A with Quartz_sand 500 g/L	+1.0	-0.1	-0.5	+0.9	-0.3
carbon source	Citric Acid 20 mM (C)	+0.7	+0.1	-0.5	+0.9	-0.2
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	+0.9	-0.0	-0.7	+1.0	+0.1
carbon source	Citric Acid 20 mM (C)	+1.3	+0.3	-0.4	+0.6	-0.2