Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_001043 and ABIE53_001044 are separated by 331 nucleotidesABIE53_001044 and ABIE53_001045 are separated by 379 nucleotidesABIE53_001045 and ABIE53_001046 are separated by 646 nucleotidesABIE53_001046 and ABIE53_001047 are separated by 263 nucleotides ABIE53_001043: ABIE53_001043 - hypothetical protein, at 1,147,994 to 1,148,161 _001043 ABIE53_001044: ABIE53_001044 - cardiolipin synthase, at 1,148,493 to 1,149,764 _001044 ABIE53_001045: ABIE53_001045 - hypothetical protein, at 1,150,144 to 1,150,461 _001045 ABIE53_001046: ABIE53_001046 - hypothetical protein, at 1,151,108 to 1,151,197 _001046 ABIE53_001047: ABIE53_001047 - SulP family sulfate permease, at 1,151,461 to 1,153,620 _001047
Group Condition ABIE53_001043 ABIE53_001044 ABIE53_001045 ABIE53_001046 ABIE53_001047
carbon source L-Lactate (C) -2.6 +0.0 -0.9 N.D. -0.1
stress RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM -3.0 -0.1 -0.2 N.D. -0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -3.4 +0.2 -0.1 N.D. -0.0
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 -0.1 -1.5 N.D. -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 -0.1 -0.7 N.D. +0.1
stress M9 with Propan-1-ol 13 g/L -2.4 +0.0 -0.4 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 +0.1 -1.2 N.D. +0.2
soil extract 2,3-dihydroxybenzoic 5 mM in soil extract -2.2 -0.0 -0.5 N.D. +0.2
replicable vector efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50 -2.5 +0.1 +0.1 N.D. -0.1
stress RCH2_defined_glucose_5mM with Cinnamic 5 mM -2.4 +0.1 +0.1 N.D. -0.2
r2a outgrowth control R2A outgrowth control -1.9 -0.1 -0.6 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.7 -0.4 -0.5 N.D. +0.3
soil extract Indole-3-pyruvic 5 mM in soil extract -2.5 +0.0 +0.3 N.D. +0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 -0.2 +0.5 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 -0.3 +0.3 N.D. +0.4
carbon source D-Mannose (C) -2.2 +0.5 +0.5 N.D. -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.0 +0.2 -1.9 N.D. -0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 -0.3 -1.8 N.D. +0.1
stress RCH2_defined_glucose_5mM with caffeic 1 mM -1.7 +0.1 +0.9 N.D. -0.5
carbon source D-Glucuronic Acid (C) -2.0 +0.1 +0.6 N.D. +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 -0.4 +0.7 N.D. +0.3
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +1.4 -0.2 -0.8 N.D. -0.9
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.6 -0.2 +1.6 N.D. +0.0
stress RCH2_defined_glucose_5mM with Shikimic Acid 5 mM -1.1 +0.2 +1.2 N.D. +0.3
carbon source Pectin 10 g/L (C) +2.1 +0.1 +0.4 N.D. -0.5
r2a outgrowth control R2A outgrowth control +1.6 -0.3 +1.2 N.D. -0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.8 -0.1 +0.1 N.D. +0.9
motility_chemotaxis Motility_chemotaxis, R2A; outer cut +1.7 +0.2 +0.9 N.D. -0.0
carbon source Citric Acid 20 mM (C) +1.5 +0.1 +1.4 N.D. -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +2.4 +0.3 +0.7 N.D. -0.3
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