Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_001007	ABIE53_001008	ABIE53_001009	ABIE53_001010	ABIE53_001011
plant outgrowth control	Plant outgrowth control	-1.6	+0.3	+0.1	-1.1	-3.9
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.9	-0.2	-0.2	+0.4	-2.2
plant outgrowth control	Plant outgrowth control	-1.4	-0.5	-0.1	-1.2	-1.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.7	-0.2	-0.3	-0.9	-1.4
plant outgrowth control	Plant outgrowth control	-3.2	+0.0	+0.0	-1.2	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.9	-0.2	-0.1	-1.3	-1.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.6	-0.0	+0.1	-1.5	+0.4
carbon source	Glucuronamide (C)	+1.0	-0.1	-0.0	-3.6	-0.7
motility_chemotaxis	Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut	-1.5	+0.3	-0.0	-1.7	-0.3
plant outgrowth control	Plant outgrowth control	+0.4	-0.2	-0.1	-1.8	-1.6
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-1.8	+0.2	-0.1	-1.6	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-3.0	-0.0	+0.1	+0.5	-0.3
carbon source	Salicylic and Ethanols	-2.1	-0.0	-0.2	+0.5	-0.9
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.7	-0.2	-0.1	+0.8	-0.5
stress	R2A with Chloride 200 mM	-2.3	-0.0	-0.1	-0.9	+0.7
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-2.8	-0.5	+0.3	+0.3	+0.1
r2a outgrowth control	R2A outgrowth control	-2.3	-0.6	+0.1	+0.8	-0.5
soil extract	D,L-Malic Acid 5 mM in soil extract	-2.5	-0.4	+0.2	+1.0	-0.4
stress	RCH2_defined_glucose_5mM with Lumazine 5 mM	-1.6	+0.1	-0.1	+0.9	-1.2
carbon source	D-Glucosamine Hydrochloride (C)	-1.3	+0.2	-0.0	+0.9	-1.5
motility_chemotaxis	Motility_chemotaxis, R2A; outer cut	+0.7	+0.2	-0.1	-2.6	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	-2.4	-0.1	+0.3	+1.9	-0.7
carbon source	Tween 20 (C)	-0.7	+0.1	+0.0	+1.6	-1.8
carbon source	D-Galacturonic Acid (C)	-2.4	+0.2	+0.1	+1.6	-0.4
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-1.8	+0.4	-0.1	+1.1	-0.3
stress	RCH2_defined_glucose_5mM with 4-Hydroxybenzoic Acid 5 mM	+1.6	-0.1	-0.1	-1.4	-0.5
carbon source	D-Mannose (C)	-1.0	+0.1	+0.2	+1.6	-1.1
carbon source	D-Sorbitol (C)	-2.1	+0.6	+0.1	+1.3	+0.4
in planta	Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+2.7	+0.2	+0.2	-0.7	-0.2
carbon source	L-Histidine (C)	+1.3	+0.4	-0.0	+2.2	+0.1